Ofur014805.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:275056-280375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.025 1.2 9.5 1.0 1 23 256 278 256 278 0.97 2 10 0.02 0.98 9.8 0.0 2 23 305 327 304 327 0.88 3 10 0.00014 0.0069 16.5 2.0 2 23 354 375 353 375 0.96 4 10 8.5e-05 0.0042 17.2 3.7 1 23 379 401 379 401 0.98 5 10 0.0035 0.17 12.2 2.3 3 23 408 429 406 429 0.96 6 10 0.0017 0.083 13.2 4.0 1 23 434 457 434 457 0.91 7 10 0.00023 0.012 15.8 0.1 1 23 464 487 464 487 0.97 8 10 0.00025 0.012 15.8 0.0 1 23 493 515 493 515 0.97 9 10 0.00087 0.043 14.1 2.8 1 23 521 543 521 543 0.98 10 10 0.0002 0.0097 16.1 3.0 1 23 549 571 549 572 0.96
Sequence Information
- Coding Sequence
- atggATTTAGAAAATATAAACAGCTGGGTCTCACAGCCAGATGTATGCAGGTGTTGCCTTTCGGCCAGCGGGACGTGGGATGTCACGGCTTCTTACATATCTgattcgggaatcaaggaagtgtaTTTTGAAATGCTTCGAGATTGTTATGGTATTACTTTGTCCTATCTCTCCAAGTGGGGCCCGAGCCGGATGGTGTGCAAGCTGTGTGTGGGTCACCTGAGGGAGGCCTGCAGCTTCCGCGACCAGGTCAGGGCTGCGGAGAAACATTTTACAGAATACTGCAGCAGTAGAGacCATAACACTGGCATGGTGACAGTAAAATTAGAAGAAAATGTCAAAGCTAACAGTCCAGAAGCTGATTTCAGTGATAGGGGAGTCCCATCTGAAGACGAAAACAATCTAATATCGCCTCCAGTTGTAAAACCTGAAAAAAGAATACAAAAGAGAAAGAAACAGAAAACAGATAAAGTGAGacgaaagaaaaagaaaactgaaACGGAATACGATTCAGACACGCCCATTGCCAACATGATAGATAAGAATGAACCTTCATGCGATGATAATAAGGCTGTGATTGGAAATGTAAAAGATGAAATTCCCAATGTTGAGAcgaATAAATTAGGGCTGGTATCGTTAAAAGTGCAAAGAAAGCAAAAGATACCTTCACAGAGCATCATCGACAACCGCTCACTTCGCTCCAATATAACTTTAGTTCTCAAAAACACCTCTGTAGTTCCTTTCAGGCATATAAACAACAGTAAATTCGCGTGCCTGTATTGTGAAAAGGGGTTTCTATTCTTCAAAGAATTGAAATCCCATATGGAATCTCACAGGAATATAACGGAAGAAGAGATTAACGTGTCTCTAAAAACTCCTAGAGATTTAATAAAGGCTGATCTAAGCGAAATATCCTGTACGCTTTGTGGGGAAAACTTCAAAAACATCGACAGTGTTATAGAGCATTTGGTAGAAGTCCACAAAAAGATTTATCATCAGAACTTACGGATGAAACCTCCTCACGGGATTTTGGGTTTCGATCTTAGCTCCGAACAGTTAAAGTGCAGTGTGTGTCAGAAACAGTTCAGGTTTTTTAAGAACCTATCTGTCCACATGAACGAGCACAGCACATGTTTTATGTGCCACGTGTGCGGCAAAAAATTCATATCGGACCATAGATTGCAGACGCATATTATGATGCACAAACGGACGAATATATTCTGCAAGCATTGCAACAAAGACTTTAAGACTGTGGCAGCAAGGAACTACCATATACGGAAGGAGCATAACGAAGCTCCTTACAAATGTCCGGAGTGTTCTGAAAGTTTTACGCAGTACCACCACAGGTTGAAGCATTTGGTTGAGCGTCATAAGGTGAAGAAGCCAGAGTTTAAATGCGATATTTGTGGGCGGGAGTTAGCTAGTTCTGGGGGGCTTGCAGCCCATAAAAGGTATTCCCACTTGAAAACAGTTCAGTACCCTTGCGAATTATGTGGGAAAGTATTCGCGTACAAATGGATATGGCAGAGGCATATGGATGTCCACACTGGTGCCAAAAACTTTGAGTGTAAGTTCTGTAATAAGAAATTCGCTAAGTCGTATTCACAGCAAATGCACGAAAGGATTCATATGAATGATAAAAGGTACGTCTGCGGAATATGTAAAGCGGCGTTTATACAGAAGTGCAGTTTGAAGAACCACACTAAAGTCCATCATCCGGAGGCTGATTTGAGCAAATTGTGA
- Protein Sequence
- MDLENINSWVSQPDVCRCCLSASGTWDVTASYISDSGIKEVYFEMLRDCYGITLSYLSKWGPSRMVCKLCVGHLREACSFRDQVRAAEKHFTEYCSSRDHNTGMVTVKLEENVKANSPEADFSDRGVPSEDENNLISPPVVKPEKRIQKRKKQKTDKVRRKKKKTETEYDSDTPIANMIDKNEPSCDDNKAVIGNVKDEIPNVETNKLGLVSLKVQRKQKIPSQSIIDNRSLRSNITLVLKNTSVVPFRHINNSKFACLYCEKGFLFFKELKSHMESHRNITEEEINVSLKTPRDLIKADLSEISCTLCGENFKNIDSVIEHLVEVHKKIYHQNLRMKPPHGILGFDLSSEQLKCSVCQKQFRFFKNLSVHMNEHSTCFMCHVCGKKFISDHRLQTHIMMHKRTNIFCKHCNKDFKTVAARNYHIRKEHNEAPYKCPECSESFTQYHHRLKHLVERHKVKKPEFKCDICGRELASSGGLAAHKRYSHLKTVQYPCELCGKVFAYKWIWQRHMDVHTGAKNFECKFCNKKFAKSYSQQMHERIHMNDKRYVCGICKAAFIQKCSLKNHTKVHHPEADLSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -