Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:275850-288202[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7 3.4e+02 1.8 0.2 1 23 91 114 91 114 0.91

2 19 7.6 3.8e+02 1.6 0.3 3 23 119 139 117 139 0.94

3 19 1.6 80 3.8 0.1 2 23 143 165 142 165 0.88

4 19 0.25 12 6.3 3.0 2 23 375 397 374 397 0.96

5 19 0.011 0.53 10.6 0.0 1 20 405 424 405 426 0.95

6 19 0.0012 0.058 13.6 1.8 3 23 437 457 436 457 0.98

7 19 0.85 42 4.6 0.4 1 23 473 496 473 496 0.85

8 19 0.0058 0.28 11.5 1.3 1 23 505 528 505 528 0.91

9 19 2.2 1.1e+02 3.3 0.2 8 23 578 594 577 594 0.89

10 19 0.19 9.2 6.7 0.9 2 23 606 628 606 628 0.91

11 19 9.6e-06 0.00048 20.2 1.5 1 23 662 684 662 684 0.98

12 19 1.4e-05 0.00067 19.7 1.3 1 23 691 713 691 713 0.98

13 19 7.9e-05 0.0039 17.3 2.3 1 23 718 740 718 740 0.96

14 19 0.00022 0.011 15.9 0.8 1 23 746 768 746 768 0.98

15 19 9.2e-05 0.0045 17.1 1.1 1 23 774 796 774 796 0.94

16 19 0.00069 0.034 14.4 2.5 2 23 803 824 803 824 0.97

17 19 0.00044 0.022 15.0 0.5 2 23 833 855 832 855 0.97

18 19 0.0015 0.072 13.3 0.1 1 23 860 882 860 882 0.98

19 19 0.00014 0.0068 16.6 2.0 1 23 888 911 888 911 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7	3.4e+02	1.8	0.2	1	23	91	114	91	114	0.91
2	19	7.6	3.8e+02	1.6	0.3	3	23	119	139	117	139	0.94
3	19	1.6	80	3.8	0.1	2	23	143	165	142	165	0.88
4	19	0.25	12	6.3	3.0	2	23	375	397	374	397	0.96
5	19	0.011	0.53	10.6	0.0	1	20	405	424	405	426	0.95
6	19	0.0012	0.058	13.6	1.8	3	23	437	457	436	457	0.98
7	19	0.85	42	4.6	0.4	1	23	473	496	473	496	0.85
8	19	0.0058	0.28	11.5	1.3	1	23	505	528	505	528	0.91
9	19	2.2	1.1e+02	3.3	0.2	8	23	578	594	577	594	0.89
10	19	0.19	9.2	6.7	0.9	2	23	606	628	606	628	0.91
11	19	9.6e-06	0.00048	20.2	1.5	1	23	662	684	662	684	0.98
12	19	1.4e-05	0.00067	19.7	1.3	1	23	691	713	691	713	0.98
13	19	7.9e-05	0.0039	17.3	2.3	1	23	718	740	718	740	0.96
14	19	0.00022	0.011	15.9	0.8	1	23	746	768	746	768	0.98
15	19	9.2e-05	0.0045	17.1	1.1	1	23	774	796	774	796	0.94
16	19	0.00069	0.034	14.4	2.5	2	23	803	824	803	824	0.97
17	19	0.00044	0.022	15.0	0.5	2	23	833	855	832	855	0.97
18	19	0.0015	0.072	13.3	0.1	1	23	860	882	860	882	0.98
19	19	0.00014	0.0068	16.6	2.0	1	23	888	911	888	911	0.98

Sequence Information

Coding Sequence: ATGACTTCGGACGAATCAGATGACGAACCATTGTCGGTGTTAGCAGCTGCTAAAAGATTAAATCCTGAGAAATTTGAAACCTACGAAACTGAAACAACTATTGAGGTAATTCGGCCAtcgaaaaagaagaaaaagaagtacTCACGTAATGATACCGTTTCTATTACCATAAAATTACATCAACCAATAAAAACCACACGACCGCCGAAGATAGTTGAGAGGCCTGCAGATGTATGGATGTACATAAAAGACCTCAATCCTACTGGACCTTACAGCTGTCTGCTTTGCTCGGAGTGGTTCATTAACCGGTCTAAAATAATACTCCACTATATTCTGAATcacaaaaaagatttttgtgGAATTTGTCGCTATTTTGTGACTGAAAGAGCGGTGTGGCAAACTCATCAGAAGTTTCACAGTCCGTGGCCATGCTCACAGTGTCTAGACAGCTTCCCAACACAGGTGGAATGGCGGAAACACTTCAGTGAGGCTCACAACCTGGTCCATTGCCGCCTCTGCCACTTCAGAACCACAGACGATGATCAATATGACGTGCACTTAATAGAAAAACATAATGTAACTAACACAGAGAGTAAAAACGCAGAAGTCATTTGGGAAGTTGAATATCTAGGTTGCCAAAATTTCCTATgcttattgtgcaataaaggagatgttttttgtaataacttCTTCAACCACTACATGGGCTATCACCACTTCACTCTCAAATGCATCACAAACATAATATCTGGTAATGATCCACCTTTTCATGTAGACGGTGCTAATGTAAGTACAGACTTTGTTACAGACCAGTTCAATATCAAAACAGGCTACCTGGAATTGGAAAAAAAGCCAGATATTGCTGATGTGCAAAATGAACAGGATTCAGGGGTAAAACAGGAGCCCCTAAgtgataatgaaaataaagaagcaaaaaacagTATTGTAGAAACTTATAAAGGCGTTGAAGATTTTGACGTTACCTTAATGGAATTGATTGTgttgaataaatgttattttgagtATGTCAATCAAACGTTAAGCCAAATTAATTCAAACACAGTTCCTGAGGATTCTGGTATAGACTACAAAACTGCCAATGACGATGTTGAATTGGACATAGAATGTGGTGTATGCAAAACCTGTGTTACATCAATACATACATTTAGCACACACATGTTAAAGATGCATTCTGTTAGATCTGTACCTATTTATTCGTGTAGAGTGTGTGCAACCACATTTGACAGTCAAGGTGAGCTTGAAGCTCATGTGACTGAAGAAATGGGAGAGTTTGATGATCTCTGGCTATGTCAATTTTGTGACAAGGAGTTTGACAATCGGGAGAATACAAGGAAGCATTTGAACAGCCATTGGGAtgttatggagtttgacaattGCTTTAGTCCACACTTGGGTTTTAAGTGCAAGTACTGTCCTACATTGTTTTGGAATGAACCTGATAGAGAGACTCATCAAATAAGAGTGCATTTTGTTAAGTACAAGGAAGACTTTTATAAGTGCGAAAATTGTTCAGAGATATTTAGTGATAAGatttggtTCATCCACCATTATGTGGAAAAGCATCAGTCGGTGCAAGAAGAGCTGCTTTTCCTTGTTAAATGTTGTGTGTGTTGTCTAGTGTTGAACACAGTTGAAGACATGAGAGCACACTTTGAGAAACAACATTCTGATGCTAGGAAAATCTTCTGTTCCCTGGGAGCTTGTGTGTTCAAGCCACTGAGTCAAAGGAAATCATTCAAAGTGCATATCAAGacgGTCCACGCTACAGAGGAGAAGAAGCCACCACGGCCAGAAGTATGCACGATCTGCACACGAGAGTTCAACAGCTCGCGCGCGTGTGCAACGCACATGGCTCAGGCGCACGGCGCGCGCAACTACAAGTGCAAGCTGTGCCGCGACGTGCTACACACGGTGGACGAGCGCAAGCTGCACTACCTCATTCGGCACCCTGGCAAGCACCCTTACGAATGTTCAGAGTGCGGCAAGTCCTTCCAGTACAAATCATCTCTGTACATGCACAAGCAAGTCCACGCACCGAATAAGCCCACTTATACGTGCTCGTTCTGCGGGAAGGTGTTTATGAAAAAGGATTCCTACCGCGAGCACATCCAGATTCACGAAGGGCCTCGGCACGCATGCTCCTACTGCCCGATGCGGTTCGTGCAACGCTCGAATATGCTGCGACACGAGCGGAGGCACACAGGCGAACGGCCCTACGCGTGCCCGCAGTGCCCTCGCACGTTCTCGGATAAAGGCGCCTGCACTTCGCACGCGAGGACTCACACCAAGGACAGGTCGTACGCCTGCATATACTGCGGGCAGACGTTTGTTCAGAAGTCTAAACTCACGTATCACGTCAGAAAACATACTGGGGAGAACCTGGAGACGTGTCAAGTATGCTCGAAGCTGTTCACGAGCGCGTGCTCCCTTCGCGAGCACATGAAGATCCACGATCGCCACACCAAGGTGCCGGTACAGTGCCCACTATGTGATCGCAAGTACCAAGACGAGCGCTACATGCTCCGCCATATTCGCACGTCACACACGCACGTGCGCTACACGTGCCCGCTGTGCCGCAAGGAGCTCACCAGCCCCGCCGGGCTGCGGCTGCACGTCGTCACGCACGGCCAGGCCAACATGTACAAGTGCAAATCCTGCCCCAAAACCTATGCTGTGAAGCGGACAATGATTCGTCACATTCGCAAACGGCATATGCCCAAGAATACCTCCCGCGCCCCACGAGAATTCTACCAGAAGTTAGACCCTCGAGAATGTTGTTTACCTCTCGACGAAGAAGCGATGACGAAAATCTTCGGACCACCAAAGAAGAAGTCCAGCGAAAACGTCATCAGAGACTTTGTGACGTTCACCAAAGGCTTAAAACTCCCTGAGAATCCCCCGGCTAATGATGGCGGCgatgacgacgacgacgatgacgATGACGACGAGGATTTGAGTGAAGAGGGAAGCCAAGACAAGGACAGCGAAGGTGAGAGCGAGGTTGATGAGAAAACGCCGCAGAAAACCGAGGAAGAAGCAGAGTTGGAGCCGACTGACTTTGTGAGCGTTAAGATCGAGCATGTGGAAGAAGATGTGGAGGAAGAACAGTGA
Protein Sequence: MTSDESDDEPLSVLAAAKRLNPEKFETYETETTIEVIRPSKKKKKKYSRNDTVSITIKLHQPIKTTRPPKIVERPADVWMYIKDLNPTGPYSCLLCSEWFINRSKIILHYILNHKKDFCGICRYFVTERAVWQTHQKFHSPWPCSQCLDSFPTQVEWRKHFSEAHNLVHCRLCHFRTTDDDQYDVHLIEKHNVTNTESKNAEVIWEVEYLGCQNFLCLLCNKGDVFCNNFFNHYMGYHHFTLKCITNIISGNDPPFHVDGANVSTDFVTDQFNIKTGYLELEKKPDIADVQNEQDSGVKQEPLSDNENKEAKNSIVETYKGVEDFDVTLMELIVLNKCYFEYVNQTLSQINSNTVPEDSGIDYKTANDDVELDIECGVCKTCVTSIHTFSTHMLKMHSVRSVPIYSCRVCATTFDSQGELEAHVTEEMGEFDDLWLCQFCDKEFDNRENTRKHLNSHWDVMEFDNCFSPHLGFKCKYCPTLFWNEPDRETHQIRVHFVKYKEDFYKCENCSEIFSDKIWFIHHYVEKHQSVQEELLFLVKCCVCCLVLNTVEDMRAHFEKQHSDARKIFCSLGACVFKPLSQRKSFKVHIKTVHATEEKKPPRPEVCTICTREFNSSRACATHMAQAHGARNYKCKLCRDVLHTVDERKLHYLIRHPGKHPYECSECGKSFQYKSSLYMHKQVHAPNKPTYTCSFCGKVFMKKDSYREHIQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPQCPRTFSDKGACTSHARTHTKDRSYACIYCGQTFVQKSKLTYHVRKHTGENLETCQVCSKLFTSACSLREHMKIHDRHTKVPVQCPLCDRKYQDERYMLRHIRTSHTHVRYTCPLCRKELTSPAGLRLHVVTHGQANMYKCKSCPKTYAVKRTMIRHIRKRHMPKNTSRAPREFYQKLDPRECCLPLDEEAMTKIFGPPKKKSSENVIRDFVTFTKGLKLPENPPANDGGDDDDDDDDDDEDLSEEGSQDKDSEGESEVDEKTPQKTEEEAELEPTDFVSVKIEHVEEDVEEEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125754;
90% Identity: iTF_01125754;
80% Identity: -