Ofur007429.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:419786-427771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00021 0.01 16.0 0.1 2 23 190 211 189 211 0.96 2 11 0.0042 0.21 11.9 0.7 2 23 216 237 215 237 0.95 3 11 0.038 1.9 8.9 2.7 2 23 244 266 244 266 0.94 4 11 0.00076 0.038 14.2 1.3 2 23 275 297 274 297 0.95 5 11 0.00011 0.0052 16.9 1.4 1 23 302 325 302 325 0.94 6 11 0.017 0.84 10.0 5.7 1 23 331 354 331 354 0.94 7 11 0.0031 0.16 12.3 3.1 2 22 361 381 360 384 0.89 8 11 0.0009 0.044 14.0 1.0 2 23 386 406 385 406 0.96 9 11 0.00059 0.029 14.6 0.4 1 23 411 433 411 433 0.95 10 11 0.0002 0.01 16.0 0.6 2 23 440 461 439 461 0.97 11 11 2.2e-06 0.00011 22.2 0.8 2 23 468 489 468 489 0.97
Sequence Information
- Coding Sequence
- ATGGAGATATGTCGAGCTTGTTTATCATCTAAACGAGGAATGATTCCATTTGATGATACTTTAgtaacaaattataatttattaaccaatttaaatGTGAAACTGTATGATTCAATGCCACAAAAACTATGCCCTAAATGTGTAGTTGCAGTGAAATCCTTTATAGAATTTAGAGAAAATTGTGTGTCCTCAGAAACAAAACTACTGGAAGACATTCAGTTGGTTAGAAAACCTAAAAATGAAAATCTTCAAACTGATGCAGAACCAGAAATAGAAATCAGTTTGAAGCAAGAAGTAAAATATGAGAATGAGAATGACTATGAAGATGTGGATTACATTGAAGAAGAATACCTTAACTATGAAGATTGTAAGCTGAGACTTcctattaaaatagaaaatgaaaCCAAGCCAGTTCTAGAGCAAACAAAACCGATAATTGAAAAAAAGAATTCTGTTAAAATTGTCAAAACTAGGCCAAAAACCAaggttcaaaagatacaaaaaagCAAAGTTATAAAACCAAAGAGGAATGCTCCTAAGACCAgagaaaaaattaacaaaacttgGCCATGTGGTATTTGCTCCAAAAATTTCGAAGATGAAAACATGTTGAAGAGTCACTTAGAGACACACATGACAGGTACAGAATGCAAGATTTGCTATGAGAGGTTTAACGCATGGCACAGTCTACTAGCACACAGGTTAGATCACCTCCCGCAACATGGACGAAAGTGTCACTTGTGCAACAAACGATATAGAGCAAGTATGTACTTAGAATACCATTTCTTAAAGGAACACAACGATGGAAagaaagtAGCGCTGAAATGCAAAGcttgcaataaagaatttaaaaatccAAGACGATTGAACAGCCATTACAATTATGCCCATattgaaagtaaatatttttgcgaCCATTGTTCAAAAGGGTATACAAGTAAATCTGCATTGAAAGGGCACATTTTGGGGCGTCATACGGACGCCAAACCTCACATGTGTGACATGTGTGGGTTCCGGTGTAAATTGAAAAGTAACTTAAATATACATAAAACAAGAAGGCATtctgaaaataaagttataacttGTAAAGAATGTGACAAGTTGTTCAAGACTCAAGAATTGTATGAGAGTCACAAATGTAAAGTGAGACACGTCATGTGTCCAGACTGCGGAATAGTGTGTACTAATAGAAAGCTGCGGTCGCACCGGCGCGTGCACGAAGCGGCGCGCCACGCGTGCCCGCGCTGCCCGGCGCGCTACAAGACCAAGGAGGCGCTGCGCGTGCACGTCGACCGGCACGACAACGTGCGCCGGCTCACGTGCAACCTCTGCCCCGCCAAGTTCTTCTCGCAAAGCGTGCTCATCAAACACCGACGTATGCACACAGgTGAAAGACCCAATGTTTGCAATGTATGCGGCAAAGCTTTCAACGGGCGCCACAATCTCAAGGTGCACCTGAAAGTTCACGGAATCGACGCGGTTGTGAAAAGAGTTAAAAATCCCGAAGATGatcttactaatatttttaaatcgtcCAATTCTAAGTTTTAA
- Protein Sequence
- MEICRACLSSKRGMIPFDDTLVTNYNLLTNLNVKLYDSMPQKLCPKCVVAVKSFIEFRENCVSSETKLLEDIQLVRKPKNENLQTDAEPEIEISLKQEVKYENENDYEDVDYIEEEYLNYEDCKLRLPIKIENETKPVLEQTKPIIEKKNSVKIVKTRPKTKVQKIQKSKVIKPKRNAPKTREKINKTWPCGICSKNFEDENMLKSHLETHMTGTECKICYERFNAWHSLLAHRLDHLPQHGRKCHLCNKRYRASMYLEYHFLKEHNDGKKVALKCKACNKEFKNPRRLNSHYNYAHIESKYFCDHCSKGYTSKSALKGHILGRHTDAKPHMCDMCGFRCKLKSNLNIHKTRRHSENKVITCKECDKLFKTQELYESHKCKVRHVMCPDCGIVCTNRKLRSHRRVHEAARHACPRCPARYKTKEALRVHVDRHDNVRRLTCNLCPAKFFSQSVLIKHRRMHTGERPNVCNVCGKAFNGRHNLKVHLKVHGIDAVVKRVKNPEDDLTNIFKSSNSKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125753;
- 90% Identity
- -
- 80% Identity
- -