Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:58294-79951[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.039 1.9 8.9 3.2 2 23 34 55 33 55 0.96

2 14 0.00011 0.0055 16.8 3.4 1 23 93 116 93 116 0.96

3 14 0.042 2.1 8.7 4.4 1 20 118 137 118 140 0.95

4 14 2.5 1.2e+02 3.2 0.9 1 23 149 171 149 171 0.80

5 14 0.76 38 4.8 0.0 1 23 176 198 176 198 0.89

6 14 0.11 5.3 7.5 0.5 3 23 232 253 230 253 0.90

7 14 9.7e-06 0.00048 20.2 0.1 1 23 288 310 288 310 0.97

8 14 0.03 1.5 9.2 1.7 1 23 318 341 318 341 0.98

9 14 0.00012 0.0059 16.8 0.0 2 23 347 370 346 370 0.96

10 14 3.2 1.6e+02 2.8 0.4 3 19 376 392 376 396 0.81

11 14 0.0012 0.06 13.6 2.2 1 23 401 423 401 423 0.96

12 14 2.2e-05 0.0011 19.1 5.9 1 23 429 451 429 451 0.97

13 14 2.1e-05 0.001 19.1 0.4 1 23 457 479 457 479 0.96

14 14 3.7e-07 1.8e-05 24.7 0.9 1 23 485 508 485 508 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.039	1.9	8.9	3.2	2	23	34	55	33	55	0.96
2	14	0.00011	0.0055	16.8	3.4	1	23	93	116	93	116	0.96
3	14	0.042	2.1	8.7	4.4	1	20	118	137	118	140	0.95
4	14	2.5	1.2e+02	3.2	0.9	1	23	149	171	149	171	0.80
5	14	0.76	38	4.8	0.0	1	23	176	198	176	198	0.89
6	14	0.11	5.3	7.5	0.5	3	23	232	253	230	253	0.90
7	14	9.7e-06	0.00048	20.2	0.1	1	23	288	310	288	310	0.97
8	14	0.03	1.5	9.2	1.7	1	23	318	341	318	341	0.98
9	14	0.00012	0.0059	16.8	0.0	2	23	347	370	346	370	0.96
10	14	3.2	1.6e+02	2.8	0.4	3	19	376	392	376	396	0.81
11	14	0.0012	0.06	13.6	2.2	1	23	401	423	401	423	0.96
12	14	2.2e-05	0.0011	19.1	5.9	1	23	429	451	429	451	0.97
13	14	2.1e-05	0.001	19.1	0.4	1	23	457	479	457	479	0.96
14	14	3.7e-07	1.8e-05	24.7	0.9	1	23	485	508	485	508	0.98

Sequence Information

Coding Sequence: ATGGCTGCTCTTTCAAAGTGGGTCCCGGTGGGGATGACCTCAGACCAGCCTCAGTTCAATCATCTAAAGCTCACCACCATCGACAAAATCGGTGGCATCTACTGCCGCATTTGTCACACAAAATTTGGAAATAAAAAGGAATATGACACACATTACCTAAAACATGATACTGGTAGCAAAGATATTACGTACACATGTGTTGTTTGTTATAAAGACATAGTTGGCTACCCCAGTTTTCGAGGACATTGTTACACAATTCATGTCATGAAAGATAAATTTAGATGCACCCATTGCAATAAGCAGTTTTCAAAGCAAACAGCACTCGTCAGCCATTATGAATCTTTGCATCAGTTCAAATGTTCAACATGCCATGTTAGattCCAATCCCAAAAAGATCTTGCCATGCATCAAATTTGCCACAAGAATGAGCAGTGTAACCCACCTTATAACTGTCAAATTTGTAACAAGCAGATTGAGGATACGAACGATTGCGAGCAACACATTGAAGACCATTGCTCCATCTCTTACTTCTGCCCGATTTGCGATGAGGGCATCAACGAAATTCAAAACGCTACTAGTCACCTGGCTAAGCATTTTGGCGATGTACTTATTGAAGACAATGAGTCCAATTCAGATTCTGAGGGCCAAGAATTTTCAAACGATAGCTCCATAGACATCCTTGGCGGTATATTCTGTTCGATCtgtaaaaaaacttataaagcCAGACCAGATTTCGATAATCATTTCATGTTAGAACAtgacgataaaaaaattatttacggCTGTAATATCTGTGCAAAAGAGTATGACAAATACTTTGTCTTTGCTAACCACTGCTATAACCATTATACCAAAGACAAATTCCAGTGCGAAGTGTGCTTCAAGAGCTTTCCCCGGCTGTCCCTGCTCGTGATTCACATGGAGGCTCACTCCAGAACGCGCGACGGCGGCTTCCAGTGCCTGCAGTGCGGACACGCGCTCCAGACTGCCAGGAGGCTCCGGGATCACTATAAGACCGAGCATGACATCTGTTACAGCCAGTGTCCGGAGGAAGGCTGCGGCAAGATCTTCGCAACACCCAAAGAGCTGGTCCTCCACCGCAAGGAGCACGCTGGAGGCAACTGGTGCCAGCAGTGCGGCCTGCGGTTCGCGTCACTGGCCGCCTGCCTCAAGCACGTGCCCGTGCACCGCAAGAAGCGCTACTCCTGCCCCGTGTGCAAGCGCTGCTATGGGGAGAAGTACCTGCTCATGAAGCATGTGACCCAGCACTTCTCTGCCGTGCTCCACGTGTGCAAGATCTGCGGCAAGGTGTACTCGCACCGCCACCGCCTCATGCAGCACATGAAGGTGCACAACGAGGCCAAGGAGCACGCCTGCGCCATCTGCGGCAAGGGCTTCGCCAAGCTCTACCTGCTCAAGCAGCACCAGAACATCCACTTCAACAGCAAGCCCTACAAGTGTTCCAACTGCCCCAAAACGTTCGCAAGCGTTCCGAATCTGAGAAAGCACATGAAGAAAATCCACAACGTCACGCAGATCACGTTCAACCATTACGAAAAGCCTGCAGAAACTAGCAACGAGAAGTTGGATGTGAGCAATCCGTCTAGTTCGGAGATGTCTGTCGACGCCCCGACCAGTTTGGAGGAGTCGGACGAGTCGTGCGGCTGGCGCGCTGATGACACCTTAGATGAGCTGATGACCCTGGAGGAGCTGGATCCGCTGGATACAAGGGCTAAGGAGATCAGCGAGATCGAAGCCGACCTCTGGGTGCCGAGTCCGATGATGCCCACTGCCACCCCAGTGCCGCTCCCCGCCAGCGTGCCGTGCGAATACGGCCCAGAACTGGTTCCTCTCGACGAGCACTGCCTACCGCACGCGCCGCCACAGCTGGTGACTCAGCCGCGTTGGCCGCCAGTCCTCACCAAACTCGCCGACTGCGCCTACGCCGACCTGGCCTACGCGGATTTAGCAGAGGTGATGAACGCCGATATCTattaa
Protein Sequence: MAALSKWVPVGMTSDQPQFNHLKLTTIDKIGGIYCRICHTKFGNKKEYDTHYLKHDTGSKDITYTCVVCYKDIVGYPSFRGHCYTIHVMKDKFRCTHCNKQFSKQTALVSHYESLHQFKCSTCHVRFQSQKDLAMHQICHKNEQCNPPYNCQICNKQIEDTNDCEQHIEDHCSISYFCPICDEGINEIQNATSHLAKHFGDVLIEDNESNSDSEGQEFSNDSSIDILGGIFCSICKKTYKARPDFDNHFMLEHDDKKIIYGCNICAKEYDKYFVFANHCYNHYTKDKFQCEVCFKSFPRLSLLVIHMEAHSRTRDGGFQCLQCGHALQTARRLRDHYKTEHDICYSQCPEEGCGKIFATPKELVLHRKEHAGGNWCQQCGLRFASLAACLKHVPVHRKKRYSCPVCKRCYGEKYLLMKHVTQHFSAVLHVCKICGKVYSHRHRLMQHMKVHNEAKEHACAICGKGFAKLYLLKQHQNIHFNSKPYKCSNCPKTFASVPNLRKHMKKIHNVTQITFNHYEKPAETSNEKLDVSNPSSSEMSVDAPTSLEESDESCGWRADDTLDELMTLEELDPLDTRAKEISEIEADLWVPSPMMPTATPVPLPASVPCEYGPELVPLDEHCLPHAPPQLVTQPRWPPVLTKLADCAYADLAYADLAEVMNADIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125746;
90% Identity: iTF_01125746;
80% Identity: -