Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:159677-161681[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0032 0.16 12.3 0.9 1 23 10 32 10 32 0.95

2 16 0.74 36 4.8 0.7 2 23 60 82 59 83 0.94

3 16 0.2 10 6.6 1.1 2 23 103 125 102 125 0.94

4 16 5.3e-05 0.0026 17.9 2.8 2 23 131 153 130 153 0.95

5 16 0.00015 0.0073 16.5 0.2 1 23 157 180 157 180 0.97

6 16 0.22 11 6.5 0.2 3 23 184 205 183 205 0.97

7 16 2.7 1.3e+02 3.1 0.1 2 20 212 230 211 232 0.91

8 16 0.0053 0.26 11.6 1.8 1 23 279 302 279 302 0.93

9 16 0.84 41 4.7 0.0 2 23 331 353 330 353 0.92

10 16 0.0012 0.062 13.6 0.4 1 23 375 398 375 398 0.94

11 16 0.19 9.2 6.7 0.8 3 23 405 426 403 426 0.84

12 16 3.7e-05 0.0018 18.4 0.9 1 22 431 452 431 454 0.90

13 16 0.006 0.29 11.4 0.4 2 23 460 482 460 482 0.94

14 16 0.00022 0.011 15.9 4.2 1 23 486 509 486 509 0.97

15 16 0.0062 0.31 11.4 0.2 2 23 516 537 515 537 0.96

16 16 0.01 0.5 10.7 1.5 1 23 543 565 543 565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0032	0.16	12.3	0.9	1	23	10	32	10	32	0.95
2	16	0.74	36	4.8	0.7	2	23	60	82	59	83	0.94
3	16	0.2	10	6.6	1.1	2	23	103	125	102	125	0.94
4	16	5.3e-05	0.0026	17.9	2.8	2	23	131	153	130	153	0.95
5	16	0.00015	0.0073	16.5	0.2	1	23	157	180	157	180	0.97
6	16	0.22	11	6.5	0.2	3	23	184	205	183	205	0.97
7	16	2.7	1.3e+02	3.1	0.1	2	20	212	230	211	232	0.91
8	16	0.0053	0.26	11.6	1.8	1	23	279	302	279	302	0.93
9	16	0.84	41	4.7	0.0	2	23	331	353	330	353	0.92
10	16	0.0012	0.062	13.6	0.4	1	23	375	398	375	398	0.94
11	16	0.19	9.2	6.7	0.8	3	23	405	426	403	426	0.84
12	16	3.7e-05	0.0018	18.4	0.9	1	22	431	452	431	454	0.90
13	16	0.006	0.29	11.4	0.4	2	23	460	482	460	482	0.94
14	16	0.00022	0.011	15.9	4.2	1	23	486	509	486	509	0.97
15	16	0.0062	0.31	11.4	0.2	2	23	516	537	515	537	0.96
16	16	0.01	0.5	10.7	1.5	1	23	543	565	543	565	0.96

Sequence Information

Coding Sequence: ATGATTCCTTTTAAATGGCGCGgcaaatacatttgtttttattgcggAGAGCACATTAATGATTACAGCGATTTGAGACAACACACGATAGATCACGGAGACTGTACGGATAATGACAGAGCTATAAAACTAGTCAAAGCGGGCGACGCGGAAGTCAAAATCGATGTTTCGGATATCACATGCAAACTGTGTCTCGTTTCGTTCATGTATTTCGATGACATGCTAACACATTTGATGCTCGATCACCATTTGCCATACAACAAAGATGTGCCGTTAGCGTTAACCACGTATCGTCTTGTAGATCTCAAATGCGTGTTCTGCGATAGTAGCTTcaactattttaataaactcgTGTCTCATGTTAACCTTAAACACCCAGTCAATCAACTGTACTGTCACGATTGCAATcagaaatttaacaaaaaaagagACCTCGAATCTCATATTCGCGCTCGGCATAGGTCGGAATATGTGTGTATGAAATGCCCAGTCACTTTTGATTCGAATGCTGCATTGCAAAAACATAAAGCCACTTCCCATGCCTCGCTTTGTAACGTCTGCTTCGAGCCTTTTTCTTCTGACACGGGCAGAGCCAATCACATAAAGAAAGTACATTTCGACAACGACATCCTACAATGCGGGTTTTGCCTCAAAATTTTAAGCACCAAAATAGCGTTCCTCAACCACGCTTCGAAATGTAACGTCAAAGATTCTAAAGACTACATCGAAACTGTCGACGATGATAAGAAACCTACGGTAGTTCAAATACGGAATAATATTGCTTGCATTATCAACATGTCTACTGCTCTGCCTTTTAAGTATTTCATGAATAAGTTCAGATGTTTTTATTGTGCGAAAGATTTTACGGAATGTGACGATTTGAAGGAACATACGGTTGTGGAGCACCCAATTTGTAATAGTAAACTCAAATGTATGAGACTCCGCAATAGAGAAGCCGGCGCAAAAGTAAAACTAGATGTATCTACGCTTTCCTGTAAAATGTGTTTTGAGCCAATGAAAGATTTGGACTATCTAATAGACCATTTGGTAGTAGAACACAAAGCTCAGTACGATAAGGCAGTTGACCACAACGTGCAGCCTTTTAAACTTATCAAAGACGATTTCCCTTGTCCGTTCTGCGCTGAGTCGTACAGATATTTCAGTAGCCTTCTAAAACATATCAGCGAGAACCACACGGAGAATAACGTCATATGCCCATTTTGTGGAGTTACTTTTAGGGCAGATCACAATCTGCGGTTTCATATATCGTTTAAGCACAAGACTGGAAATTTCAAATGTACCGTTTGCGATTTGAGTTTCCCGACCAAAGCACATTTGAGGGATCACTCCGGCTCGGTCCACGGGGACAAAGTGGCCCAATGTCAAGAGTGTCTAGAGAAATTTACTACGTTATACGCTGTCCAAAGACACAGGATCAACGTCCACGGTCTTGGTCACAAGTGCTCGTATTGCGGCAAATTGTTCACCAAGAAATCTTTCATGGTGAACCACGTACGACGGTTGCATCTGAAAGAGAAGAACGTGGAATGCTCCGTGTGTTTCGAAAGATTTTTCGACGCAAACGCTTTGAAAATGCACACGATCAAACACGTCGGAGAGAGGAACTTCCATTGCGATATTTGCGGGAAGAAGTTCCTTTGGAAGAAGAATCTTATAGGGCACATGTCCTCGCACATTAAGACTAATCCAGTGTAG
Protein Sequence: MIPFKWRGKYICFYCGEHINDYSDLRQHTIDHGDCTDNDRAIKLVKAGDAEVKIDVSDITCKLCLVSFMYFDDMLTHLMLDHHLPYNKDVPLALTTYRLVDLKCVFCDSSFNYFNKLVSHVNLKHPVNQLYCHDCNQKFNKKRDLESHIRARHRSEYVCMKCPVTFDSNAALQKHKATSHASLCNVCFEPFSSDTGRANHIKKVHFDNDILQCGFCLKILSTKIAFLNHASKCNVKDSKDYIETVDDDKKPTVVQIRNNIACIINMSTALPFKYFMNKFRCFYCAKDFTECDDLKEHTVVEHPICNSKLKCMRLRNREAGAKVKLDVSTLSCKMCFEPMKDLDYLIDHLVVEHKAQYDKAVDHNVQPFKLIKDDFPCPFCAESYRYFSSLLKHISENHTENNVICPFCGVTFRADHNLRFHISFKHKTGNFKCTVCDLSFPTKAHLRDHSGSVHGDKVAQCQECLEKFTTLYAVQRHRINVHGLGHKCSYCGKLFTKKSFMVNHVRRLHLKEKNVECSVCFERFFDANALKMHTIKHVGERNFHCDICGKKFLWKKNLIGHMSSHIKTNPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125768;
90% Identity: iTF_01125768;
80% Identity: -