Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:560862-586765[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00028 0.014 15.6 3.4 1 23 238 260 238 260 0.98

2 10 0.046 2.3 8.6 0.1 1 13 266 278 266 283 0.85

3 10 0.00074 0.037 14.3 1.0 1 23 294 316 294 316 0.97

4 10 7.5e-06 0.00037 20.5 0.9 1 23 322 344 322 344 0.97

5 10 5.9e-05 0.0029 17.7 0.0 1 23 350 372 350 372 0.98

6 10 0.0078 0.39 11.1 0.3 1 23 377 399 377 399 0.96

7 10 0.64 31 5.0 4.2 3 19 407 423 406 429 0.90

8 10 2.9e-05 0.0014 18.7 0.4 1 23 511 533 511 533 0.97

9 10 0.00015 0.0072 16.5 1.5 1 23 597 619 597 619 0.96

10 10 7e-05 0.0035 17.5 6.1 1 23 629 651 629 651 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00028	0.014	15.6	3.4	1	23	238	260	238	260	0.98
2	10	0.046	2.3	8.6	0.1	1	13	266	278	266	283	0.85
3	10	0.00074	0.037	14.3	1.0	1	23	294	316	294	316	0.97
4	10	7.5e-06	0.00037	20.5	0.9	1	23	322	344	322	344	0.97
5	10	5.9e-05	0.0029	17.7	0.0	1	23	350	372	350	372	0.98
6	10	0.0078	0.39	11.1	0.3	1	23	377	399	377	399	0.96
7	10	0.64	31	5.0	4.2	3	19	407	423	406	429	0.90
8	10	2.9e-05	0.0014	18.7	0.4	1	23	511	533	511	533	0.97
9	10	0.00015	0.0072	16.5	1.5	1	23	597	619	597	619	0.96
10	10	7e-05	0.0035	17.5	6.1	1	23	629	651	629	651	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCTACGCCGAGCAATGTCTCGGGCTTCGGGTATTCGTGGGGCTTTACGAGTTCTGCGGACCTTACCAAGGGCGAGGTGGAGACTCCCAGTAGCATGAGCTACACTCTCGGGAACACGGTATCACCCGAGACAACGTTGACTGTTATGTCGCACAAGTCACCGCAGGTCCAAGAGAAGGTTGGCACAGTCGTAGCGGTGTCCAACACAGCAGCGCAGGTCACTAGAGTTGTCACGGCGAACGCACCGGCCGGTCGAAGAGCCATGTTTGTGCTGAATGAGAGTCCAACACATACTATCAACAGGGTATCGCAACAAAACCAGACAGCTACCATACATACTGCCAACTTGACCTCGAAGCCGTTTATGACACCGATCGGGCCCATCCAGTTGACAGCGGAAGAGTGTAACGAGATTTTGATGAAGCGAGCTCTGCAGGCTCAGGGTATAGCCACTCCAGTAATCGATGCTTCTCAATTAAACCATACGTTGTTAAACGGTGGGATCAAAACAATCAATGAGGGTACACAACAGACGCAGACGGAAACTATTCAGACAACGCCGGTGCATCACCATATATTGCACACTAAACAGGAACCGGGCACAGCAAATAACTCAccaaaaACGGTATACTCGCAGACGGAGCTGATGAATACCAACACGGTGATGACAACGGTGGCCCCAGCGGCGGTCAAGGAGCGGCCCTACTCGTGCGACGAGTGCGGCAAGTCGTTTCTGCTGAAGCACCATCTGACTACGCACGCGAGGGTTCATACAGGCGAAAGGCCGCACGTCTGCGCTCACTGCGGCAAGGCGTTCGCTCGCAANtttcttataaatcgctatggtttaGTACACAGCCGCGACCGGCCGTTTGTGTGTGGAGAGTGTGGACGCGGCTTCCCTCTGAAGCGGCACCTCGTGACGCACAGCAAGTACCACGCCGGCGAGCGGCCCTACGTCTGCAGCGACTGCGGCGAGAGCTTCGCGCAGAAGGAGCACCTAGTGATGCACAGCCGCTTCCACGGGTCCCTATCGCCCTTTGTATGCGCGGAGTGCGGCGCTGCCTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGCAAGGTGCCGCACGCCTGCCCTGTGTGCGCCAAGGAGTTCCTGCAGAAGCGGACGCTCGTGGCGCACCTCAAAATCCACACGGGCGAAGACCTGGTCGCGTGCTTCGAATGCGGAGAAGCGTTCAAGTGCAAGTCGGAGTTGCAGCAGCACTGCAAAATGACGCGCCACTGCATGGCCACCATACAgacgcagcagcagcagcaacaacaacaacaacaacagcagcagcaacaacaacaacagcagcagcaacagcagcaacaacagcagcagcaacaacaaATGCAGACGACGGTCATCAAACAAGACGAATTCAAACCGCAAATTGTCCAACAGGAGGAGTTCAAACCACAAATAGTGCAGGTGATAGGTGCGGACGGGCAAATCGTATCTGAGAAAACTACGCCCGGCTACGCGTGTCCCGAGTGTGGGTCATGTTTTAATACTAAGGAGGCGCTATCGCTTCACGTGCGCTTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTGACGGCCGCGCTTCAGCCCGGACTGGTCGCCGCGGCGCAGCAGGCTACGCAGActCAACCTATTCAAATAATATCTTCCAATCCCAGTAATGTTGTACATACGCAAGTAATAGCTACGAATCACCACGTAGCCGCACCCCGGCCAAAGATTCACTTTTGCGTCGACTGCGGTAAAGGTTTCGCGGCTAAACACGGCTTATTAGCGCATCAGAGGAGACACCCGGAAGGGAGCTGCACGCTGCGGACGCACGTTTGCGGGCACTGCGGGAAGGCGTTCTTCCAGAAGAACCACCTCATGCTGCATCAGAGACAGCACATGGACCTACCACCCCGTGCGTCTCAGGCACAACAACAAGCGAcgcaacaacaacaacagcagcagcaacaacaacaacagcagcaacaacaacaacagcagcagcaacaacaacaaGCGCAGCAACAGGCAGCACAGCAGGCCGCGCAACAAGTGCAGCAACAAGTCCAACAACAAGTGCAGCAGCAACAACAGCAGCATCAGCAGCACCAGACGAACTTGGACATAGAACAGGACCACAATCAACCGGCGCATATACAAGTGGTAACGAACCGGTCAGGCCAAGTGATCGGCAACCAGATAGTGGTGGGGTCACTAAGTGGCGTCGGCACACGACGCTTGGTAGCCGGTTCACAGCTGCACATCATTCGTGACGCCAAGGCCGCGCCGCACTTGCATGCTAAACGCGCGATACACACCGCCGGCGATGTGAAAGAAGTCGGTGGGCTGGTCCTATCAACGGGTAGAGGAACGGGCCTCATCAAGTACGAGATATCCATCCCTCCACCAACGTCCGTGGTTCAAGTCCAACAGCTGGACTGA
Protein Sequence: MCMPTPSNVSGFGYSWGFTSSADLTKGEVETPSSMSYTLGNTVSPETTLTVMSHKSPQVQEKVGTVVAVSNTAAQVTRVVTANAPAGRRAMFVLNESPTHTINRVSQQNQTATIHTANLTSKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGIKTINEGTQQTQTETIQTTPVHHHILHTKQEPGTANNSPKTVYSQTELMNTNTVMTTVAPAAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARXFLINRYGLVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPFVCAECGAAFARKFQLVNHGRVHGKVPHACPVCAKEFLQKRTLVAHLKIHTGEDLVACFECGEAFKCKSELQQHCKMTRHCMATIQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQMQTTVIKQDEFKPQIVQQEEFKPQIVQVIGADGQIVSEKTTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQQATQTQPIQIISSNPSNVVHTQVIATNHHVAAPRPKIHFCVDCGKGFAAKHGLLAHQRRHPEGSCTLRTHVCGHCGKAFFQKNHLMLHQRQHMDLPPRASQAQQQATQQQQQQQQQQQQQQQQQQQQQQQQAQQQAAQQAAQQVQQQVQQQVQQQQQQHQQHQTNLDIEQDHNQPAHIQVVTNRSGQVIGNQIVVGSLSGVGTRRLVAGSQLHIIRDAKAAPHLHAKRAIHTAGDVKEVGGLVLSTGRGTGLIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01282625;
90% Identity: -
80% Identity: -