Ofur007775.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:473020-474980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.2 2.1e+02 2.5 0.2 1 9 163 171 163 186 0.70 2 10 0.0003 0.015 15.5 0.1 2 23 190 212 189 212 0.90 3 10 0.054 2.7 8.4 0.2 3 23 216 237 214 237 0.97 4 10 0.0007 0.034 14.4 0.4 1 23 240 262 240 262 0.98 5 10 0.00045 0.022 15.0 0.5 2 21 269 288 268 289 0.94 6 10 3.5e-05 0.0017 18.4 0.1 1 23 308 331 308 331 0.95 7 10 7.1e-07 3.5e-05 23.8 1.8 1 23 337 359 337 359 0.97 8 10 5e-06 0.00024 21.1 1.9 1 23 365 387 365 387 0.99 9 10 0.0012 0.058 13.6 0.8 1 23 393 416 393 416 0.93 10 10 1e-05 0.00051 20.1 0.8 2 23 422 443 421 443 0.97
Sequence Information
- Coding Sequence
- atgttggaAAAGTACgaagtaaatttattagtctcaAATGTGTTGAACGAATGCCGTTTTAGCCACTGCAGGTTATGCCTAAGAGGTATAGAAAAAGAGTACGTTACACTAAAAGATTTTGTCGAGATGGACTTTCTAACCGACGATGCTCAGCTTCTTCCTGAATTCTTTGGCCAGGTGCTTTCTTCGGAGAGTAAGGCTGAAGGAAAGATCGCTGGCGTTGACGCTGTGTGCTTGAGCTGTGTTGAAAATATGCTTGAAATGATGACTTTCattaaaatgtgtaaaagttCTAATGACCTGCTACACAACGTTTTTAATGGATTAACAGAAGCATTAAATGTTGAACTTGATACCACTAATAATAAAGCAGTCTACGTCTTTGTGGAAGAGCATGAATCTAAACTTCATCCAGTTAAAAAAGACAATACAGATAATGAGAATTTTAATGCACTGAAACTGAGACATGAGaggaaaacaaaacaatacgaATGTACAAAATGTGACATGTTGTTGGACAACCTGCTTGAAATAAAAGCTCACAACTTTAGTTTTCATTATGAAATTACCTGTGACGTTTGTTATGAGAGTTTTTCAAATGAGTCGGATTTGGAAAATCATTCAGTTATGGCACACCGATACGGATGCGACGAATGCGGTATTCGTATGGACACTGACACGGAGCTGTTCAGTCACATCAGAAAAAACCACAAAGTTTATGTGTGCAAAGACTGTGGAGTTTCCTGTGAAGGCGTTGACAAGCTGCAGATACATGAACGGAGGCatcttttttccaaaaaaagcaAATGCCCTAAATGTGGTAAACTATACACTTCAAAGGATTTCTATGAAAGGCATGTGAAATTATGTTTGGAGGACAAGTTGGACCCGCATCCGTTTAGAACTGAAATGGTAAAAACATATATTTGTGACCTGTGCGGGAAGGGCTACAGTACCCCCGGCGGGCTCCGGGTCCACGAGAGGTTCACGCACGGCAACGCCAAACCACATGAATGTGAATATTGCGGGAAGCAGTTCACCGCTCCCAGTTACTTGAAGACCCACATGTTAAAACATACAGGAGAGAAGAATTTTAAGTGTACAATATGTAACAGAAGATTTGTGTCTAAAGAAGCCTTATTGTATCATACCAGAAGACACACTGGCGAGAAGCCGTATTCTTGCAAGTATTGCAACGAGAGGTTCGTTAATGCGTCTGCTAGAGCGGAACATGTGAAATTTAAACACGTGGGTCCAAAACTGTCCTGCGAGATCTGTTCCCGCAAGTTCGTGACGGCTTCCTTCTTGAAGCTGCACATGAACCGGCACAGCGACCCCACCAGTAAGATGTACGTGTCGCGGACGCTGCCGCCCAACATGCCGGgcgatgaaaataaaaagattagaTTTGCGATCCTGAAATAA
- Protein Sequence
- MLEKYEVNLLVSNVLNECRFSHCRLCLRGIEKEYVTLKDFVEMDFLTDDAQLLPEFFGQVLSSESKAEGKIAGVDAVCLSCVENMLEMMTFIKMCKSSNDLLHNVFNGLTEALNVELDTTNNKAVYVFVEEHESKLHPVKKDNTDNENFNALKLRHERKTKQYECTKCDMLLDNLLEIKAHNFSFHYEITCDVCYESFSNESDLENHSVMAHRYGCDECGIRMDTDTELFSHIRKNHKVYVCKDCGVSCEGVDKLQIHERRHLFSKKSKCPKCGKLYTSKDFYERHVKLCLEDKLDPHPFRTEMVKTYICDLCGKGYSTPGGLRVHERFTHGNAKPHECEYCGKQFTAPSYLKTHMLKHTGEKNFKCTICNRRFVSKEALLYHTRRHTGEKPYSCKYCNERFVNASARAEHVKFKHVGPKLSCEICSRKFVTASFLKLHMNRHSDPTSKMYVSRTLPPNMPGDENKKIRFAILK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125720;
- 90% Identity
- iTF_01125720;
- 80% Identity
- -