Ofur012300.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:181375-185739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0016 0.081 13.2 4.7 1 23 168 191 168 191 0.95 2 18 8.2e-06 0.00041 20.4 1.0 1 23 200 223 200 223 0.96 3 18 0.037 1.8 8.9 0.3 2 23 236 258 236 258 0.97 4 18 0.0089 0.44 10.9 2.3 1 23 267 290 267 290 0.96 5 18 4.1e-06 0.0002 21.4 1.6 1 23 302 325 302 325 0.97 6 18 2.1e-05 0.0011 19.1 0.3 2 23 353 375 352 375 0.97 7 18 0.0021 0.1 12.9 1.7 2 23 385 407 384 407 0.96 8 18 0.045 2.2 8.7 1.5 3 19 413 429 411 432 0.92 9 18 0.0014 0.069 13.4 0.5 2 21 437 456 436 459 0.94 10 18 0.046 2.3 8.6 0.9 2 23 468 490 468 490 0.94 11 18 0.0001 0.0052 16.9 2.6 1 23 495 518 495 518 0.96 12 18 0.0022 0.11 12.8 0.3 2 23 530 552 530 552 0.96 13 18 0.0041 0.2 11.9 0.6 1 23 575 598 575 598 0.92 14 18 0.079 3.9 7.9 0.1 2 23 605 626 604 626 0.95 15 18 0.0086 0.42 10.9 2.0 2 23 632 653 631 653 0.97 16 18 5.2 2.6e+02 2.2 0.8 1 23 690 712 690 712 0.80 17 18 0.0085 0.42 10.9 0.2 1 23 719 741 719 741 0.97 18 18 0.17 8.3 6.9 2.0 1 23 747 770 747 770 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCCGTAAAAGAAGAGGTCGATGTAAAAATGAAGATGGAATATGATCAAGACCAATCTGGATGGAAAGTAAAAGAAGAATTTGAGAGAAAAGACCCAACATCATTTCTGCCCGAGGAGCCAATGTCGTATGAAatcaaagaaaagaaaaaaaagaagaaaaagaaaaaacaagaaGATCCTTTCAAAGATATAGAACATAAGCAACAAGACGTCTTCACAGAACCATCGTTGGAATTGAAATTAGATCCAGAAGtaaatattaaagttgaaaacaTTGAAGTCGAACTGGATTTTAATGATTTTGACAATGGCAGTGGGTTAACTGACGCCTTGCCCGACGATACCCAGGAGCCAGTTGTGAAACTCGAGCAAAACCAGCATGCGTTGCTACTAACTTTTGAGAGTGTCATTAACGAACACTCTGTACTCGGATTAAACAAAGAGAATAATGAAGTTGAATCTGAACACGAGGAAAACGTCAAAATTGCGCCTACATACTTGTGCAAAGTCTGCCACCTAGTCTTCAAGTCCACGAAAACTCTAAGAATGCACCAGAAAAGGAAGCACAAAGTGTACAGACGGTCGTTCAAACACATCTGTGACTATTGTGGCATGTCGTACGAGACTAAAAACAGTCTTATTGCACATATTAGAAGAAAACATGGCCCTGATTCAACGCCTGAAGATAAGGAGGAACGGACTTGCGAAATATGCGCGTTAGTCTTCAAGGGCATGGCTAGATTACGGATGCATATGCAGAGGAAGCATGGGTCGTTTGTAGAGTCATTTAAACACGAATGCAGCGAATGCGGGCTCACGTATGACAAATACAGAAGTCTCATGGTGCATTTTCAACGCAAACACAGTGGTGCTAAGAAACCTATAGAGAACCAATGGTACAATTGCCCGTTCTGTCCCAAAATCTTTACTAGAAGAGAGACGTACGCGCGTCATATGCAGAGAAAGCATAAAGTGTCTGAGGAAGACGCTCCAAACGAAGCTACGCCTAATTATTTAGAGAATTGCAAGAATGAGCAAACTGGAGAAATTACTTGTAAAGAATGCCCTCTAGTTTTCTCTTCCATCGGCTATTTGAAGTTGCATATGCGAAGAAAACATAATGCTTTGAAGGAATACTTCAGATTGAAGTGCAGTTTTTGCAATTTGTCTTACGATAAAGTAGAAAGCCTTAAAAGGCACGTTAGAAGGAAACACGACCAGGGTTCACACTGTGAGGTGTGCAATAAACAATTCGACACGAGAGAATCCTATTTAAATCATTCACACATAAGGGCAATTAAGGAATGCTCGCTTTGCGGACTAATTTTCGCGTCGCAAGGTGGTTTGGCAAAGCATATTAGGTGCACGCACAAAATCGACTCCCCTAAAGTAGCCTATTGCAATATCTGCAACGAAGGATTCCACGACAGACGTCTGCTCAAACCACATCTACTAAAAGTGCATTTAAAAGTGTCTTACACGTGTAAATATTGCAAGAAAATCTTCAAGGCAAAGGAGAGTTACAGGCGGCATGTGCTAATAAAACACTTCGCGAATAATCCTTTAAATGTACAGAAGGAGCAATGCGACCAATGCCCTGAAGCGTTTAACGGTGAATTCGAGCTGTGCAAGCACATAAATCTCGCTCATGGTAAATGTAGTGTTGTGAAACCAGACGTAGAAGTCAAAACGGAGGATGCAGACATGAAGAACAACTACCAATGCACAAAATGTCCGGAAATCTATCCTAACTTCGAGCAGTTAAAGCTGCATTTCGAACAAAACCACACCTTTTCAACGGAGACTCAGTGCCAAATGTGCGGTGAAATGGTCCCTGGTTCAGACTTGCAGAAGCATATTAAAAGTGCTCACACAGAGACCACAGTTCAGTGTAAATACTGTGAGTTtaatacaacaaataaaaatagtatgacACAGCATTTATTAAGGCACAAAAATGCCACAACGTTGCACTGTGAGTTTGCCGGTTGTAGATACAAAAGTTATTATGAAGGTGCTATGATGAAGCACAAGCAAAAGCATAAAGAGTTAGGTGTTAAGTTTCAATGTTCCAAGTGTCCCTTTCAGTCgatgaataaatacattttgagaTACCACGAGGAAGCGCATATGACTGGGAAGAAAAGGTATACATGTGATCAATGTGACTATGCTACCATTTTGCCAGCGAACCTTGTTCAGCATAAATACAAGCATTCTACGGAGAAAAGGTTTAAATGTGAGGTGTGTCCGTTTGCAACGAAATACAACACATCCTTGCGTTTTCACGTTAAAAAGAAACACTGTGATCTACCAAGTTTCAGTTGA
- Protein Sequence
- MVSVKEEVDVKMKMEYDQDQSGWKVKEEFERKDPTSFLPEEPMSYEIKEKKKKKKKKKQEDPFKDIEHKQQDVFTEPSLELKLDPEVNIKVENIEVELDFNDFDNGSGLTDALPDDTQEPVVKLEQNQHALLLTFESVINEHSVLGLNKENNEVESEHEENVKIAPTYLCKVCHLVFKSTKTLRMHQKRKHKVYRRSFKHICDYCGMSYETKNSLIAHIRRKHGPDSTPEDKEERTCEICALVFKGMARLRMHMQRKHGSFVESFKHECSECGLTYDKYRSLMVHFQRKHSGAKKPIENQWYNCPFCPKIFTRRETYARHMQRKHKVSEEDAPNEATPNYLENCKNEQTGEITCKECPLVFSSIGYLKLHMRRKHNALKEYFRLKCSFCNLSYDKVESLKRHVRRKHDQGSHCEVCNKQFDTRESYLNHSHIRAIKECSLCGLIFASQGGLAKHIRCTHKIDSPKVAYCNICNEGFHDRRLLKPHLLKVHLKVSYTCKYCKKIFKAKESYRRHVLIKHFANNPLNVQKEQCDQCPEAFNGEFELCKHINLAHGKCSVVKPDVEVKTEDADMKNNYQCTKCPEIYPNFEQLKLHFEQNHTFSTETQCQMCGEMVPGSDLQKHIKSAHTETTVQCKYCEFNTTNKNSMTQHLLRHKNATTLHCEFAGCRYKSYYEGAMMKHKQKHKELGVKFQCSKCPFQSMNKYILRYHEEAHMTGKKRYTCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00074811;
- 90% Identity
- iTF_01125705;
- 80% Identity
- -