Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:510003-532269[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.5 1.7e+02 2.7 0.5 2 14 261 273 260 282 0.71

2 15 0.026 1.3 9.4 0.1 1 22 287 308 287 311 0.91

3 15 0.0014 0.072 13.4 3.5 2 23 414 436 413 436 0.94

4 15 0.0012 0.057 13.7 0.1 1 23 442 464 442 464 0.96

5 15 0.021 1 9.7 0.1 1 23 473 496 473 496 0.89

6 15 1.1e-05 0.00054 20.0 4.6 1 23 501 523 501 523 0.98

7 15 3.1e-05 0.0015 18.6 0.8 1 23 529 551 529 551 0.96

8 15 0.0001 0.0049 17.0 4.9 1 23 557 579 557 579 0.98

9 15 1.3e-06 6.3e-05 23.0 0.4 1 23 585 607 585 607 0.98

10 15 0.0059 0.29 11.4 3.2 3 23 615 635 613 635 0.97

11 15 2.9 1.4e+02 3.0 0.2 1 10 641 650 641 652 0.85

12 15 0.0059 0.29 11.4 3.2 3 23 709 729 707 729 0.97

13 15 0.024 1.2 9.5 0.1 1 21 735 755 735 756 0.91

14 15 0.00029 0.014 15.5 0.2 1 23 763 785 763 785 0.98

15 15 1.8e-05 0.00087 19.4 4.7 1 23 791 814 791 814 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.5	1.7e+02	2.7	0.5	2	14	261	273	260	282	0.71
2	15	0.026	1.3	9.4	0.1	1	22	287	308	287	311	0.91
3	15	0.0014	0.072	13.4	3.5	2	23	414	436	413	436	0.94
4	15	0.0012	0.057	13.7	0.1	1	23	442	464	442	464	0.96
5	15	0.021	1	9.7	0.1	1	23	473	496	473	496	0.89
6	15	1.1e-05	0.00054	20.0	4.6	1	23	501	523	501	523	0.98
7	15	3.1e-05	0.0015	18.6	0.8	1	23	529	551	529	551	0.96
8	15	0.0001	0.0049	17.0	4.9	1	23	557	579	557	579	0.98
9	15	1.3e-06	6.3e-05	23.0	0.4	1	23	585	607	585	607	0.98
10	15	0.0059	0.29	11.4	3.2	3	23	615	635	613	635	0.97
11	15	2.9	1.4e+02	3.0	0.2	1	10	641	650	641	652	0.85
12	15	0.0059	0.29	11.4	3.2	3	23	709	729	707	729	0.97
13	15	0.024	1.2	9.5	0.1	1	21	735	755	735	756	0.91
14	15	0.00029	0.014	15.5	0.2	1	23	763	785	763	785	0.98
15	15	1.8e-05	0.00087	19.4	4.7	1	23	791	814	791	814	0.96

Sequence Information

Coding Sequence: ATGATGGAAGTGTTTCTCTACAATTCTACAGTTTGTAGATTATGTGGAGAAGAAAATGATAATGGAACATTGCTATATTCTTGTGAAGAAAATACTCAAAACTTGGGTGAACTTATCAATACATATCTACCCCTGAAGGTATCAGATGATGGCCAACTGCCCCGTACCATCTGCCCCGGATGTACTATACAATTGGAAGCTACTGTTGAATTTTTTACTCTCATCTACAATGGCCAGAAAGTCATCCGTGAACTTTATCAAAGAGAGAAGGAGTATAAAAGTAATAATGAAATTTCCACCATGACtgaagaaaatgttttaacGGACACTATGGTCTATGAAATAACAACCGACGGCGTGTATCAAGAGGAGCACCCGGCGGCGCTAGCAGCCGCCGGTTTGGACAAGCCGAAGCGCAAGCGCGGCCGCCCGCCCAAGAAGACCAAGGCTAACATGGAGAAGGCGCAGGCCCAGGATACCGCCCTGAAGCAGGCGGAGCTGCCCAAGACTGAGGCGGTGGAAACCACTGGCAAGCGGCGAAGGAAGACTCCCACGCGGTATAAGGAGGCTGTTCAGGGCAAAGAGCTGGAGAGGATATTCAAAGAGGAGGGCGTGATCGACGGAGATGAAGACGAGGAGAACAAAGCCGAGGCCGAGCGCAAACGCCTGCCGAGAGAGCCCGAGGTCATCGGCCATAGAGAAGACTCTGGCGAACTCGTCGTGGTGGTTAAGGGAAAAGGCCGCGGTAGACCTAAAGGTCGTTCGCGCCAAGGTCCCCAAGAATGCGACATCTGCGGTCTCCAATTCTCGTGCGTCGGCCGCTACATGTCGCACGTGGCATCGCACGGGCCGGTGCGCTACCGCTGTCGGGAATGCGGTGCCACGCTGCCCACGCGCCTCCAGTTTGAACAGCACCAGGCGCGTGCAGGGCATACAGGCCGCCTTGTACTGCCTGCCGACGCGGATGAAGAGTTCCCGACCCACGCTGAAGTGCTAATAGAAGCTCCCAAAGATCCGCTAGCACCAGACGTTGAGACGCCAAATGTCTGCGAAGGCCTGCCCGACCTTAGCGCGGAGCCCCCGGAGCCGCCGCAGCCGGCCCAGACCACGAAGCAGGCTACGAGTGACGTCAACAATGACGTCATGCCCGACACCACTGGTGATGACAatgTGCTCACAATGAATTTACCAAATGATCCTGAAGACGAAGAGAAAACCAAAAAAGGCAAACCGAAGTTAAAATGCAACCACTGCGACAAAATGTTCAGCTCTAAGCAAAGCAAATCTATGCACATTAAGGCGACCCACCAGGGCGAGCGGCCATACACCTGCGGCGAATGCGGCGCCAAGTTCGCGTATCCTCGCTCGCTGTCACTACACGTTGTGTCGCACCGCCGCGGCAAACACGCCAAGGGATACGCCTGCGACCTGTGCGGAAAGGTCCTCAACCACCCGTCATCCGTGGTGTACCACAAAGAAGCGGAGCACGCGGGCCAGCGCTACATCTGCAGCAAGTGCGGCAAGCACTTCAAGCACAAGCAGCTGCTCGCGCGCCACCAGCTCGTGCACTCGCAGCACCGGCCCTTCACCTGCAAGACTTGCAACGCGTCGTTCAAGACGAAGGCGAACCTTCTAAACCACGCGCTGCTCCACTCAGGCGTGAAGCGCTTCTCATGCGAGATTTGCAAGCACAAGTTCGCGCACAAGACCAGCCTCACGTTGCACATGCGATGGCACACAGGTCAGAAGCCGTATTCATGTGGTTCCTGCGGCAAGTCGTTCAGCCAAAAGGGCAACTTGTCAGAGCACGAGCGCATCCACACCGGCGAGAAGCCCTACGGATGCACGCTGTGCGGGCGCCGCTTCACCACCTCCTCACAGCACCGCCTGCACGCGCGCCGCCACGCCGCCGAGCGGCCCTTCGCCTGCAACCAGTGCGGCAAACGCTCGCGAGAGACCGTCGTAGCTCCCAGTAGCTCGCGTGAGCCCGTCGTAGCTCTCAGTAGCTCGCGAGAGCCGTTCTTAACTCCCATTAGCTCGCGAGAGACCGTCGTAACTCCCACTAGCTCACGCAAGTGCGTCGTAGCTCACGAGCGCATCCACACCGGCGAGAAGCCCTACGGATGCACGCTGTGCGGCCGCCGCTTCACCACCTCCTCACAGCATCGGCTACACGCGCGCCGCCACGCCGCCGAGCGGCCCTTCGCTTGCAACCAGTGCGGCAAGCGGTTCCTCTCCCGGGCCGCGTACGCAGCGCACGCGCGGCGAGAAGCGGGCGCGCGAGCGCACCGCTGCGGCTGGTGCGGGCGCGGCTTCGCGGAGCGCTGGGCGCTGCTCAAGCACGCGCGCCGCCACACGGGCGAGCGACCCTTCCGCTGCCCGCACTGCCCGCGCACCTTCGCCGACTGCTCCAACATGAACAAGCACCGCAAGCAAGTCCACAAACAAATCAGCCTCCTGGCGCCGGAGCCCTCGCGCGGTGCCCCAGTGGCGATGGTAGCGGAGCCCTCGCCCGAGCCCGCGCTCGACAACGCTGGGGATTCGGATTCTGAGCGCGTCATCTACGTGGCCTACGACGTGGGCTCAGACGAGCCCGCCTACCACATCATCGATGCTGAACAGGCATTAGAGCTCCAAGAACCCGAGGAAGAACCTGAGATCAGCCAGCCGGAGCCCACGCAACACATGCCGGTGACGGACGAGCACGGCAACCCGCTGCACTTCACGATGCAGGACGGCACGCGGCTCGCCATCACGTCCGCCGACGGGCACTCGCTGCAGGTCGTCACGCGCGACGGACAGACGATCCCCGTCGAGATCAACGGCTACGCCGAGCCCGAGGAGGTGGACAACCCGGACACCATCGTGCACCAGCTGCACCTGCAGAAGAGCGTCGACGGCGCCGGACACCTCTACGCGCTCGTGTAG
Protein Sequence: MMEVFLYNSTVCRLCGEENDNGTLLYSCEENTQNLGELINTYLPLKVSDDGQLPRTICPGCTIQLEATVEFFTLIYNGQKVIRELYQREKEYKSNNEISTMTEENVLTDTMVYEITTDGVYQEEHPAALAAAGLDKPKRKRGRPPKKTKANMEKAQAQDTALKQAELPKTEAVETTGKRRRKTPTRYKEAVQGKELERIFKEEGVIDGDEDEENKAEAERKRLPREPEVIGHREDSGELVVVVKGKGRGRPKGRSRQGPQECDICGLQFSCVGRYMSHVASHGPVRYRCRECGATLPTRLQFEQHQARAGHTGRLVLPADADEEFPTHAEVLIEAPKDPLAPDVETPNVCEGLPDLSAEPPEPPQPAQTTKQATSDVNNDVMPDTTGDDNVLTMNLPNDPEDEEKTKKGKPKLKCNHCDKMFSSKQSKSMHIKATHQGERPYTCGECGAKFAYPRSLSLHVVSHRRGKHAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYICSKCGKHFKHKQLLARHQLVHSQHRPFTCKTCNASFKTKANLLNHALLHSGVKRFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCGSCGKSFSQKGNLSEHERIHTGEKPYGCTLCGRRFTTSSQHRLHARRHAAERPFACNQCGKRSRETVVAPSSSREPVVALSSSREPFLTPISSRETVVTPTSSRKCVVAHERIHTGEKPYGCTLCGRRFTTSSQHRLHARRHAAERPFACNQCGKRFLSRAAYAAHARREAGARAHRCGWCGRGFAERWALLKHARRHTGERPFRCPHCPRTFADCSNMNKHRKQVHKQISLLAPEPSRGAPVAMVAEPSPEPALDNAGDSDSERVIYVAYDVGSDEPAYHIIDAEQALELQEPEEEPEISQPEPTQHMPVTDEHGNPLHFTMQDGTRLAITSADGHSLQVVTRDGQTIPVEINGYAEPEEVDNPDTIVHQLHLQKSVDGAGHLYALV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -