Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:70034-90993[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.4 71 3.9 0.4 2 20 7 26 6 28 0.87

2 13 0.97 48 4.5 0.0 2 21 34 53 33 54 0.92

3 13 0.12 5.9 7.3 0.3 1 12 222 233 222 242 0.85

4 13 2.8e-05 0.0014 18.8 1.5 1 23 391 413 391 413 0.99

5 13 2.3e-05 0.0011 19.0 1.1 1 23 433 455 433 455 0.99

6 13 0.13 6.3 7.2 0.1 1 23 480 501 480 501 0.89

7 13 8.4e-05 0.0041 17.3 2.5 2 23 507 528 506 528 0.96

8 13 0.00028 0.014 15.6 2.8 1 23 544 566 544 566 0.98

9 13 1.3e-06 6.4e-05 22.9 4.5 1 23 572 594 572 594 0.98

10 13 0.00035 0.017 15.3 6.5 1 23 600 622 600 622 0.98

11 13 1.8e-06 8.7e-05 22.5 0.4 1 23 628 650 628 650 0.98

12 13 0.00032 0.016 15.4 0.5 1 23 654 676 654 676 0.97

13 13 0.00058 0.029 14.6 0.1 1 23 684 707 684 707 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.4	71	3.9	0.4	2	20	7	26	6	28	0.87
2	13	0.97	48	4.5	0.0	2	21	34	53	33	54	0.92
3	13	0.12	5.9	7.3	0.3	1	12	222	233	222	242	0.85
4	13	2.8e-05	0.0014	18.8	1.5	1	23	391	413	391	413	0.99
5	13	2.3e-05	0.0011	19.0	1.1	1	23	433	455	433	455	0.99
6	13	0.13	6.3	7.2	0.1	1	23	480	501	480	501	0.89
7	13	8.4e-05	0.0041	17.3	2.5	2	23	507	528	506	528	0.96
8	13	0.00028	0.014	15.6	2.8	1	23	544	566	544	566	0.98
9	13	1.3e-06	6.4e-05	22.9	4.5	1	23	572	594	572	594	0.98
10	13	0.00035	0.017	15.3	6.5	1	23	600	622	600	622	0.98
11	13	1.8e-06	8.7e-05	22.5	0.4	1	23	628	650	628	650	0.98
12	13	0.00032	0.016	15.4	0.5	1	23	654	676	654	676	0.97
13	13	0.00058	0.029	14.6	0.1	1	23	684	707	684	707	0.96

Sequence Information

Coding Sequence: ATGGGAGACATGAGTTTGAAATGCCCACTCTGCTGCAATCAGACTTTTGATTCAAAATTGTCACTTGTAGAGCATTTGGCGAATATATTATCTAATCTAACTTGTCCTATTTGCGAGAATAGGTGGTCATCGTTGGCCCATCTTATAGAACATTTGAATCTTGACGATTGCCAAAGTCAAGCCATCCACATAAAAACTATAGATGAGTCTGAAGAGGATTCAGTAATAAATCCCGCACCTCCTTCAAATCCAAGTGAGAATGACAGTGaaattcgAATCGAAAATGTAACCACTGTTGAAACTGTTAATGAAAGTGTGGAGAATGAAAACTTTGTGAGTAGCATACCAACTGAGAATAGTCACATAGAAATAAAGCTTACTACTGACGGTCTAAATGATGGGAAAATGTATGTGGAGTATGTGAACCATGATAAGTTGAACTCATGCTTGCAAACCCAAGAGCTGAAACTGTTGACGGAGGATGGTGAGATGGAACAGTTTGTGGTGATGTCACCGAACAGTGGCGAACTCAGTTTGGGGGGTGCCATTGTCACGAAACAGAATGAAGATGGAACCATCTCCCTAACTACAGTTAAAGATACAAAAGAGTCTGAAACTGTGATCACACCGGCTGAAGTGGAATTGGAAGACACTCCGGAGCTGTACAGCTGCAACACGTGTGGGGTTTCGTTCTCCTCTGTCGCCGAACACATTCAAAACTATCACAATGATCAAGAAGTGGTGGTTGAGGAACCCATGGAGGATGATTCCAGTGCAGTGGTTGAAACACTGCAGTATGACACTCTGACCAGTGAAGTAGTGACACCTCCCAAGCCCAAGACAAGGCAGATTATCACTGAAAATGGTGATATAGTGGATGCACCCTTTATAATTGATAACCCTCCTGAAACTGAGGAGTTTATAGTTCCAAATGTGGTTGAGAAACCCAAAGCGAAAGGGAAAAAGTTTGTACAAATTGATAAATTCTGTGATAGTCTTGTAAAGAATATTTACCAGATTAATGaAAAGGATGGCACCTACCACAAAGTGATTATGAACGAATCAAAAGCACCCGATGGCACCAAACTTAAAACATACTGGTGTTTGTCTTGTGAGATCAGTGTCAGTAATTTAGACGATTTTAAACTGCACCCTTGTAAAGTTTtaaaatatcaATGTGTATATTGTTCTGTTGCTTATTCCAATTCTAAATCATTGTGTGCTCACATGAAGGTACACAAGGTGAGACCAGatggaATGAGTATCGATTTACCGCGCCAAGACATACCCACGCGCTATGAATGTGAGATCTGCAATACAGCCTTTCAATCAAATAAATCGTTGAAATTGCACAAGAGAATGCACGATCCTGTCAAGGCTCGCCAAATAGAACCGCCAGTGGAGAACGCCGACGGCACAGAGACCAGTAACTGTAGCTACAAGTGTCCGATCTGCGAGAAGATGATTCCGATGGACTACCTGGCCATACACCAGGAGTCGCACAAGTCGAACGAGCTCAACTGCCATATATGCAACAAGAAGTTCTACTCGACAGAATACCTGCAGATGCATATGACTGTCCACAATATGGATAAGATAACAGTGAACAAATCAGACAAACTGCTTCCGTATAGCTGTTCCTACTGTAACAGACGGTTCGTGAGGCCGCACGAAAAGGTCAAACATGAACGAATACATACAGGTGAGAAACCCCACTCGTGCGAGATTTGCGGCAAGTCGTTCCGTGTGTCGTACTGCCTCACGCTACACATGCGAACGCACACCGGCGCGCGCCCGTATACGTGCCCGCACTGTGGGAAGAGGTTCAAAGCGCACAGTGTATACAACCACCACCTGCTCACGCACTCAGAAGTCCGCGCGTACAAGTGTCCCTACTGCCCGAAGGCGTTCAAGACGTCCGTACAATTGGCCGGCCACAAGAACTCGCATACCAAACCCTTCTCTTGCCCACACTGTAATAGGCCGTTCGCATCTCTCTACGCTGTCCGCGTGCATTCGGAGACGCACGCTCGCCAGAACAACCTGAAGTTCTCGTGTTCGCTGTGCGGCGCGAGCTACGCGCGGGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTTCATCAACAGGACGTCGATGCCATGGACCTGCCTGTGGTGAATATAGCGAAGATTAATAAAGACGACTGGCCGTTGAAAGAAAGCGATGGCGATGTTGAGACCATAACCCTCACTCACAAAGATTTGTCGCAAGAGATATGTGAATTAGAAATGTCTTCCAGCGAATTAATTGATCCTATTAaggtaacaaattaa
Protein Sequence: MGDMSLKCPLCCNQTFDSKLSLVEHLANILSNLTCPICENRWSSLAHLIEHLNLDDCQSQAIHIKTIDESEEDSVINPAPPSNPSENDSEIRIENVTTVETVNESVENENFVSSIPTENSHIEIKLTTDGLNDGKMYVEYVNHDKLNSCLQTQELKLLTEDGEMEQFVVMSPNSGELSLGGAIVTKQNEDGTISLTTVKDTKESETVITPAEVELEDTPELYSCNTCGVSFSSVAEHIQNYHNDQEVVVEEPMEDDSSAVVETLQYDTLTSEVVTPPKPKTRQIITENGDIVDAPFIIDNPPETEEFIVPNVVEKPKAKGKKFVQIDKFCDSLVKNIYQINEKDGTYHKVIMNESKAPDGTKLKTYWCLSCEISVSNLDDFKLHPCKVLKYQCVYCSVAYSNSKSLCAHMKVHKVRPDGMSIDLPRQDIPTRYECEICNTAFQSNKSLKLHKRMHDPVKARQIEPPVENADGTETSNCSYKCPICEKMIPMDYLAIHQESHKSNELNCHICNKKFYSTEYLQMHMTVHNMDKITVNKSDKLLPYSCSYCNRRFVRPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYTCPHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCPHCNRPFASLYAVRVHSETHARQNNLKFSCSLCGASYARAFALKDHVKQVHQQDVDAMDLPVVNIAKINKDDWPLKESDGDVETITLTHKDLSQEICELEMSSSELIDPIKVTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125703;
90% Identity: iTF_01125703;
80% Identity: -