Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: prg
Assembly: GCA_004193835.1
Location: NW:134402-137428[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.027 1.3 9.3 2.2 1 23 177 200 177 200 0.92

2 10 0.00094 0.047 13.9 0.4 1 23 206 229 206 229 0.96

3 10 3e-06 0.00015 21.8 3.6 1 23 235 257 235 257 0.96

4 10 2.4e-07 1.2e-05 25.2 2.8 1 23 263 285 263 285 0.99

5 10 1.6e-05 0.00078 19.5 0.1 1 23 291 313 291 313 0.97

6 10 0.0018 0.088 13.1 0.7 1 23 319 341 319 341 0.94

7 10 6.4e-05 0.0031 17.6 1.0 2 23 434 456 433 456 0.95

8 10 5e-05 0.0024 18.0 1.1 1 23 462 484 462 484 0.95

9 10 6.9e-06 0.00034 20.7 3.2 1 23 490 512 490 512 0.98

10 10 0.0013 0.066 13.5 0.0 3 23 521 541 519 541 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.027	1.3	9.3	2.2	1	23	177	200	177	200	0.92
2	10	0.00094	0.047	13.9	0.4	1	23	206	229	206	229	0.96
3	10	3e-06	0.00015	21.8	3.6	1	23	235	257	235	257	0.96
4	10	2.4e-07	1.2e-05	25.2	2.8	1	23	263	285	263	285	0.99
5	10	1.6e-05	0.00078	19.5	0.1	1	23	291	313	291	313	0.97
6	10	0.0018	0.088	13.1	0.7	1	23	319	341	319	341	0.94
7	10	6.4e-05	0.0031	17.6	1.0	2	23	434	456	433	456	0.95
8	10	5e-05	0.0024	18.0	1.1	1	23	462	484	462	484	0.95
9	10	6.9e-06	0.00034	20.7	3.2	1	23	490	512	490	512	0.98
10	10	0.0013	0.066	13.5	0.0	3	23	521	541	519	541	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTATATAATTGCCAATTTCCATACGCTCTGCCGTCTATGTCTTAGCAAGAGCACGTTCACCGTTTCAATTTTCGGCGCTGCGCCTGATGATGAGGCAAATGTTGCTTTAACCTCCAAAATCGCGGAATGTTTTGAACTGCAGATGGACCCCAATGATGGATTACCTGGCAGAATATGCTACAAATGTTTGTTCAAGCTTGACAAATGTTGCAAGTTCAAACTGCAATGTATACAGAATGAGACCAGACTAAGGCAAATCACAACTAGAACTAATGAGTTAGATAATTCTAATTCATCTGAAGTAAGTGCATATAACTACACAAACTCACAAGATTCTACAAAACCAAAACCTGAGGATTACATTGTTGAAGACAGTGTTGTGATGGTGGTTGATCCGAGCCTTGACTATGATTCTTCAGAAGAATCTGAAGCACCGGAACCTGAGAATAATGAAGTGACAGAAAGGGACAATACACCAGAAGGAGAGCCAATGTCCGAGTCTTTCTTCAAAGCTGTATTTATGTGTGAGTATTGTGACCAGGCCTTTGTTTCACAAGAGAAATGTAAAGAACACGAGCAGAGCTATCACGACCCCAACCTCCCATATAAATGTGTGGAATGTAGTTTAGTTTTTGCTGAACGTAGTCAATATATTCAGCATACTAAACAAGTACATGGTAATGACAAACCTTATCACTGCCCAGAATGTGATAAATGTTTTGGGCGCCGCTCAGATTTAAGGAAGCATTCTATTGTCCACACTGGAATAAGGCCTTATCAATGTCAATACTGCTTAAAAAGCTTTTCACGTAATACCAATTTAAGCAAACACTTGCGAATTCATGCTGGCCACAAGCCCCATGTTTGCCCCTTGTGCCCTAGAAGCTTTGTTGCTAAAGGCGATCTACAACGGCATGTACTAGTGCATTCTGGTATGAAGCCCTTTGCGTGTCGAAAGTGTCCATTGACATTTGGAAGACGAGATAAGTTACTGAAACATGAAGTACGCCATGCACCTGCCAAACCTAGGCGCAAGAATGAATTTGAAAATGATCATGGAAATGACATGGTTGTTAATGTTAATCCTTTTAGCAACTTGATGACTTCACCCACCCTCAACCCTGATGGGTCTCATGCCGATTATGATTTACCAAGAGTTCCTGATCACATTTCTGGGGAAAGTAGTTTTGTGAATCAAGTAAAAAACCCATCAACATCTGGGAAACAAATTCAGAGTTCACCGCCCAAACCCAAGGCACTAGCCAATAAAAATAGGcctaaaaacataaaatgtcaTCAATGTCCTAAGAGGTTTTCCTCATTAGATGCATACAAAACTCATGTTTCAATAGCTCATATTGGATCCAGAGTGTTTCAATGTAAGATATGCTTCAAAAAGTTCCCTCGAAAGAGAGAGCTCGATCGTCATGCAGCTTTACATACTGGAATGAAACCTTTCTCATGTAGTCAATGTGATAAAAAGTTTACTAGAAAAGATAAATTGGATAAACATGAACAAACACATGAATGTTTGGTTGTAAATATGCCATGTATTGAATGTGGAGCGACTTTTGAGAAGAAAGCAGACTTAGTTGCTCACATTAAATCTCATTTTACTGATAATTTTGACGATAAGAGTTCAGAGACTGAAATGAAGAAAGAAGATGAACCTGACTTCCAATTGGATGACAATTTTTATGACATTGGGACTTGA
Protein Sequence: MEDSYIIANFHTLCRLCLSKSTFTVSIFGAAPDDEANVALTSKIAECFELQMDPNDGLPGRICYKCLFKLDKCCKFKLQCIQNETRLRQITTRTNELDNSNSSEVSAYNYTNSQDSTKPKPEDYIVEDSVVMVVDPSLDYDSSEESEAPEPENNEVTERDNTPEGEPMSESFFKAVFMCEYCDQAFVSQEKCKEHEQSYHDPNLPYKCVECSLVFAERSQYIQHTKQVHGNDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPFACRKCPLTFGRRDKLLKHEVRHAPAKPRRKNEFENDHGNDMVVNVNPFSNLMTSPTLNPDGSHADYDLPRVPDHISGESSFVNQVKNPSTSGKQIQSSPPKPKALANKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRVFQCKICFKKFPRKRELDRHAALHTGMKPFSCSQCDKKFTRKDKLDKHEQTHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKSSETEMKKEDEPDFQLDDNFYDIGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185530;
90% Identity: iTF_01125702;
80% Identity: iTF_01125702;