Ofur004309.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:27377-28984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.1e-07 2e-05 24.5 0.2 3 23 160 180 159 180 0.98 2 11 1.9e-05 0.00093 19.3 2.2 1 23 186 209 186 209 0.91 3 11 2.6e-05 0.0013 18.8 0.3 1 23 217 239 217 239 0.98 4 11 7.4e-06 0.00037 20.6 0.9 1 23 245 267 245 267 0.98 5 11 8.5e-06 0.00042 20.4 0.8 3 23 275 295 274 295 0.97 6 11 0.00018 0.0088 16.2 1.6 1 23 301 323 301 323 0.98 7 11 8.6e-08 4.3e-06 26.6 2.6 1 23 329 352 329 352 0.96 8 11 1.4 68 4.0 0.2 5 20 358 373 357 376 0.76 9 11 0.011 0.57 10.5 3.6 2 23 383 405 382 405 0.94 10 11 0.099 4.9 7.6 0.2 1 23 411 436 411 436 0.96 11 11 0.00016 0.008 16.4 0.7 1 23 442 465 442 465 0.92
Sequence Information
- Coding Sequence
- ATGGATCTCAAGCTGTGCCGCTTATGTGGAGAAACAGTCGGAAACGTAAATGTTTTTGATACCGACCAAAATGGTGTCTCGATATGTTCAAAAATCATGCATTGCTGCTCCAAaatcaaaatagaaaattatgatGGACTGCCTTCTGTTATTTGCGTCTGCTGTGAACAAGATTTGGCTACAGCTTACCGATTTATATTGAAATGCGAGGCCACTGATAAGACTCTGCGGTCTCAATATTTGGAATCCAAACACAACACTGTATTgactaaaatagaaataaaatctgaagattatgaatttaataataGTGATCATGACCTGTCTATGAATTACAACTCGTATGATGAATTAGATGTGCCTCTTGCAGTTGTAAGCAAAAGAATAAAACtggaaaatacaaaatcatgtaaaaacaaaagtaaaggTTTTCCAAAacgtaaaaagaaaagaaataaacagAAAGGCCCTGAGAACTGTTCCGTGTGTGGAAAGGAATTCGCTAACCCTTCCACACTGTTAATTCACATGCGATCTCATACTAATGAAAAGCCCTACCAATGCAAATTCTGTGATAAAAGATACAAAAACGCGGGTAGTCTAAAAAGACATTCAGTCAGAAATCACATGAAAATAAGAGCCAGGAGATTTATCTGTGAGAGTTGTGGCAAAGGGTTCTACACGAAGACGGATATAATAATCCATTTGCGGACGCATACAGGGGAAACTCCGTATTCCTGCTCGGAGTGCCAGGCTGTGTTCACCCAGCTGAGCTCGTTGATAAGGCATAAAAAGAATCATCTAGGAGAAAAAACAGAAGCTTGTGATGTATGCTACAAAAAGTTCATTACAAAAGACTCACTAAGAAGACACCGAATGGTTCATACTAGCAGTAAACAATATTCATGTAATATTTGCCTAGGAATATTTAAGTATAAACAAAACCTCACCAAACATTACAAGGTCCACTCTGAACCGAATAGTTTTGTATGTAATCATTGTGGCCGTACGTTTAATTCGAAAGGGAACCTTAAGACTCATATGGACAGACTACACTCTGAAAAGTCTGGTTACTGCAATACATGCTCTAAGATTGTTTCAAACCTTGAGGTGCATATGTGGAAGCACACTGGAGAAAGGCCACTCAAGTGTGAACTTTGCACTAGAAGTTTTTGTGAAGTGAGAGCGCTTGCCCACCATATGAACTTTCGTCACAATAAGACTGATAAATTCAAATGCACAGTTGAAGGCTGTCTATGTGGCTTTCCATCCCGCCCAATGCTCGAATATCACATTGCCAAAGTACATGAAAGTTGCTTTAAATATCCATGTGACAAGTGCTCCAGAGGTTTCTACAGAAAAAATGATTTGGTCAGGCACAAAATAGGAACTCACAAGGAAAAGTTGATGTAG
- Protein Sequence
- MDLKLCRLCGETVGNVNVFDTDQNGVSICSKIMHCCSKIKIENYDGLPSVICVCCEQDLATAYRFILKCEATDKTLRSQYLESKHNTVLTKIEIKSEDYEFNNSDHDLSMNYNSYDELDVPLAVVSKRIKLENTKSCKNKSKGFPKRKKKRNKQKGPENCSVCGKEFANPSTLLIHMRSHTNEKPYQCKFCDKRYKNAGSLKRHSVRNHMKIRARRFICESCGKGFYTKTDIIIHLRTHTGETPYSCSECQAVFTQLSSLIRHKKNHLGEKTEACDVCYKKFITKDSLRRHRMVHTSSKQYSCNICLGIFKYKQNLTKHYKVHSEPNSFVCNHCGRTFNSKGNLKTHMDRLHSEKSGYCNTCSKIVSNLEVHMWKHTGERPLKCELCTRSFCEVRALAHHMNFRHNKTDKFKCTVEGCLCGFPSRPMLEYHIAKVHESCFKYPCDKCSRGFYRKNDLVRHKIGTHKEKLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076827;
- 90% Identity
- iTF_01125695;
- 80% Identity
- -