Ofur003319.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:177453-180531[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.056 2.8 8.4 6.1 1 23 33 55 33 55 0.98 2 18 0.71 35 4.9 0.4 3 23 85 105 85 106 0.96 3 18 0.074 3.6 8.0 4.6 2 23 129 151 128 151 0.93 4 18 0.013 0.64 10.4 0.1 1 23 159 182 159 182 0.93 5 18 0.0016 0.08 13.2 0.2 2 23 186 208 185 208 0.94 6 18 0.0012 0.058 13.6 0.2 1 23 213 236 213 236 0.96 7 18 0.00025 0.012 15.7 0.4 2 23 244 266 243 266 0.96 8 18 0.00053 0.026 14.7 0.1 3 23 274 294 273 294 0.97 9 18 1.5e-06 7.2e-05 22.8 1.7 1 23 300 323 300 323 0.95 10 18 0.031 1.5 9.2 0.1 2 23 430 452 429 452 0.92 11 18 0.27 13 6.2 2.3 2 23 475 497 474 497 0.94 12 18 0.0012 0.059 13.6 3.2 1 23 503 526 503 526 0.95 13 18 0.0007 0.034 14.4 1.2 2 23 530 552 530 552 0.92 14 18 0.024 1.2 9.5 0.2 2 23 556 578 555 578 0.94 15 18 0.0016 0.077 13.2 1.0 1 23 585 608 585 608 0.95 16 18 9.5e-05 0.0047 17.1 0.3 2 23 615 636 614 636 0.93 17 18 0.002 0.099 12.9 2.9 1 23 642 664 642 664 0.97 18 18 2.6e-07 1.3e-05 25.1 0.7 1 23 670 692 670 693 0.96
Sequence Information
- Coding Sequence
- ATGTTAAAACGCCAGAAGAAGCTTGATTTGGCCCAACTTATCACTACCATCGTCACCAAGTCAACCCTGATGCCCTTCAGGTGGCACGGCGGGAAATACATGTGCTTTTATTGCTGCACGCATTTTGTAGACAGTTCGAAACTCAGAGAGCATCAAGAAACCCACCCTGATGTGGATATAAACGAAATTTTATTAAGGACAGTTTACAAAGAATCGTTATTTCGAATCAAGCTAGACGTAACCGAAATCTGGTGCACGGAATGTCCAGAGGAACTGCAGTCTTTCGAAGAATACATCGAACACTTGTCGACCCACCACGACATTACTTTCGAGAAAGCCATCATATCTCGGTGCGAGCTCTTCAAACTGACGGATGAAGTTCTAAACTGCCTACAATGCGAGGAGACCTTCAACCACTTCGGTCACCTTTTAAACCATATTCATCAAAGTCACATAGACGCGGATAAGCATAAATTCTTGTGCGAGATCTGTGGGCAAGGATTCGCTGACAAATGGGTGGTTGCCACGCACATTAAACACGTTCACCGGTTACAGCAGTGCAAATACTGTCCAGAGGTATTCCAGACCCAGTACGCGATGGACAAACACGTCGGCACCGTCCATAAGACTGAGAAATTCAAATGTCCTATGTGTCCAAAGATTTTGCCTACAAGGTACATGAAGAAGCGTCATCTAGCCATGGCCCACGATTGCAAGAGCGCTCAGCTTACTTGTGATCTTTGCGGAGTTGTTTTTACAAGGAACAACAAACTTGTGATGCATAAAAAGAGGGTTCATTTCAAGGAGAAGAACGTGGCGTGCGATGTCTGTGGAGGCTTCTTTTTCGATGCGGACTCGTTGAAGAAACACCAGATAAGTCACAGCCAGGACAAACCGTTCCAATGTGATATATGCCCGAAGAGTTTTAAGAGGAAGAGTGGGCTAGCTATGCATATCTCTCAATGTCATGCGACTGAAGAGAAGGCGGATAATGAAGATTTATCTGTTCCAGAAACTGGATTCCGGCTGAGTCTCCCCTCGCTCGACGGCGAGCGAACAGCGCAGTGGGCTCTCAGGAACCTGGTCGCTGTCATCGTCCAGCACTCCACGATCATGCCCTTCAGATGGTCCTCCAATAAGTTCATGTGCTTCTACTGCTGCTGCCCTTTCCACGAAGTGACCAAACTTAAATCTCACACCCTTATAGAACACGAAAACGCAAAGCTGCAAACCATTTTGATGCTAGCCAAAACCAGCAGTCGCCTAAAGTTAGACGTTTCGGAAATATCTTGCAGGAAATGTCCCAAAAGTCTTCGCAATTTGGACGAATTTCTTGACCACGCTGCATCGGCGCATGATCTGGAATTCAATAGGGAAAGCAGCAAAACGTTTCTGTGCTTCAAACTGTCTGATGAAGGGATGAGTTGCTTGGACTGCGATGAACGGTTCCAATTCTTCGGCACTCTTTTGACACACACGCACAAATACCACAATAAATGTAACTCGTTTTTGTGCGAAATCTGCGGGCAAGGTTTCGTATCACAAGCCCATGTAGCTCATCATTTAAAAAAGTGCCATTCTGAGGGAGAATGCGTGAAATGTCAGAAGAAATTCCGGACGCAATATGCTTTGACACTCCACAACGAAAAGGAGCATCGAACTTGGAAGTGCCCAAAATGCACTGAAGTGTTAGGAAGTAGATATTTGAGGAAACGTCATATGGCGCTGGCGCATGACGTTggcaacaatatttttaagtgcGACGAGTGCGAAAAGATATTTGTGTTGAGACACAAGCTTATTGAGCACAAAGCGAGGATCCATTTGAAGGAGAAGAAGATGGAATGTCCTATCTGTGGATTTAAGGTCTTCAATAAAGAGTTGCTAAAACGTCACATGGTCAGGCATGATGATACAAGGCCGTTTGAGTGTGATATATGCAAGAAGACGTTCCAAAGAAAGAAAACCTTGGATTTCCATCGGCGGATCCACACGAACGACAAGCGATACGTTTGCAAAGACTGCGGCAAGTCGTTCGTGCAAGTGGCCAGCTTGAAGTTGCACATTAAAGTGCATCATACCAGCAATGAAACTGCTTCCTGGAactaa
- Protein Sequence
- MLKRQKKLDLAQLITTIVTKSTLMPFRWHGGKYMCFYCCTHFVDSSKLREHQETHPDVDINEILLRTVYKESLFRIKLDVTEIWCTECPEELQSFEEYIEHLSTHHDITFEKAIISRCELFKLTDEVLNCLQCEETFNHFGHLLNHIHQSHIDADKHKFLCEICGQGFADKWVVATHIKHVHRLQQCKYCPEVFQTQYAMDKHVGTVHKTEKFKCPMCPKILPTRYMKKRHLAMAHDCKSAQLTCDLCGVVFTRNNKLVMHKKRVHFKEKNVACDVCGGFFFDADSLKKHQISHSQDKPFQCDICPKSFKRKSGLAMHISQCHATEEKADNEDLSVPETGFRLSLPSLDGERTAQWALRNLVAVIVQHSTIMPFRWSSNKFMCFYCCCPFHEVTKLKSHTLIEHENAKLQTILMLAKTSSRLKLDVSEISCRKCPKSLRNLDEFLDHAASAHDLEFNRESSKTFLCFKLSDEGMSCLDCDERFQFFGTLLTHTHKYHNKCNSFLCEICGQGFVSQAHVAHHLKKCHSEGECVKCQKKFRTQYALTLHNEKEHRTWKCPKCTEVLGSRYLRKRHMALAHDVGNNIFKCDECEKIFVLRHKLIEHKARIHLKEKKMECPICGFKVFNKELLKRHMVRHDDTRPFECDICKKTFQRKKTLDFHRRIHTNDKRYVCKDCGKSFVQVASLKLHIKVHHTSNETASWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125696;
- 90% Identity
- iTF_01125696;
- 80% Identity
- -