Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:364467-374746[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0006 0.029 14.6 5.9 2 23 220 242 219 242 0.96

2 12 0.00097 0.048 13.9 1.8 1 23 249 271 249 271 0.94

3 12 7.3e-05 0.0036 17.4 1.1 2 23 278 299 277 299 0.97

4 12 0.0011 0.054 13.7 0.0 6 23 309 326 308 326 0.99

5 12 0.00017 0.0085 16.3 0.1 1 23 335 357 335 357 0.93

6 12 9.6e-06 0.00047 20.2 0.4 2 23 364 385 363 385 0.96

7 12 0.013 0.63 10.4 9.1 1 23 391 413 391 413 0.96

8 12 1.9e-07 9.2e-06 25.6 0.1 1 23 419 441 419 441 0.97

9 12 1.3e-06 6.6e-05 22.9 2.7 1 23 447 469 447 469 0.99

10 12 0.0021 0.1 12.9 0.4 1 23 475 496 475 496 0.93

11 12 0.025 1.3 9.4 1.5 1 23 502 524 502 524 0.94

12 12 5.5e-06 0.00027 21.0 1.1 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0006	0.029	14.6	5.9	2	23	220	242	219	242	0.96
2	12	0.00097	0.048	13.9	1.8	1	23	249	271	249	271	0.94
3	12	7.3e-05	0.0036	17.4	1.1	2	23	278	299	277	299	0.97
4	12	0.0011	0.054	13.7	0.0	6	23	309	326	308	326	0.99
5	12	0.00017	0.0085	16.3	0.1	1	23	335	357	335	357	0.93
6	12	9.6e-06	0.00047	20.2	0.4	2	23	364	385	363	385	0.96
7	12	0.013	0.63	10.4	9.1	1	23	391	413	391	413	0.96
8	12	1.9e-07	9.2e-06	25.6	0.1	1	23	419	441	419	441	0.97
9	12	1.3e-06	6.6e-05	22.9	2.7	1	23	447	469	447	469	0.99
10	12	0.0021	0.1	12.9	0.4	1	23	475	496	475	496	0.93
11	12	0.025	1.3	9.4	1.5	1	23	502	524	502	524	0.94
12	12	5.5e-06	0.00027	21.0	1.1	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGGATCCTGATATTTCTAATGCATCGAAAGAAAAAGTTATGGGTGACAACAATTCACCATACAACTGCGGACCTGAACAGATAGAAATACCTTTCCATATATTTCAAGACTTAAGCTCAAAAAGTCTGAAAGTCCAAAGTTTGTGCAGGATTTGCTTAAAGTCTTTAGGGAACGATGATATGATTCCATTGCGTTCTACTTATTATGAAACTGAAACTCTTGTAgatattattaagttatttactTCAATACAGataaatTTAAATGATGTTTTGCCTTTAAATATATGTATCACATGCCAGGCAGATGTTATTCACTGCTAcaagtttaaaatcaaatttgAAAAATCTGAGTATATTTTACAAACTTTAATGAAAGAGCAGTTTATGTTAACACAAGATGCTGACAATATCAAcagTGACACTTGTGTGAATAACTCAACAATTTGTAAAGATGAAGTCAAGGAAGAAACTATCGAAGatatGGATGAACAATACTTGGAGGATAATGTCAATTTTTCTAGTGATGATGAAGCACTTTGCATAGTTCAAAATACTGGTAACAAAGTAAAagaTGAGTTAGAAATCACTATCACAGattcaAAATCCCTACTCAAGAAAGTAATGTCACATAAAGAGTCTCCGGATAAGCAAAAGTCTTGCAGCTTCTGTCATAAGAAATTCAGCAAAATCAAGAATCTTAGGGACCACATAAGGAGGAAGCATAGCTCTGATGAGCATTCACACCCATGCACCAaatgtaaagaaatatttaGCTCAGAGCATGACTTGAAGGTGCATTCAGCAGTACACAGCACTGGTCCACCATGGAGTTGTAATACATgtgaaaaagtatttaaagCCAAGCCGAAGCTGCGGCGGCACCTGCAGCGGCACATGCAGGCCAAGCGCTTCGCGTGCGCGTGCGGCAAGGCCTTCAGCGAACTGTACGCGCTGCGGAGACACGCGCGCGTGCACACCGGCCAGGCGCCCGACAAGAAGCACGCCTGCCCCGTCTGCGACAAGAGATACAGCGAAAGCAGTGCGTTAGCGCAGCACGTGGCCGGTCACCGCGGCGAGCGGCCGTGCGTGTGCGCCGTGTGCGGCAAGGCTTTCGCCTCCGCACGGCTGCTACGCTCACATCGCCGCGTGCACTCGGATGCCAAGCCGCACGCCTGCCGCTACTGCCCCAAGCGGTTCCGGCACGAGTCGACGCGCAACACGCATCACCGCACGCACACGGGAGAAAAACCGTACATATGCGCCGCCTGCGGGAAGGCCTTCATACAGAACTCCAACCTCACGCTGCATATGAGGACGCACACCGGTGAAAAACCTTATTCATGCAGCAAATGTGAGCAGAAGTTCACGTCAAGGTCTTCTCTAAAGGCCCATCTACGAAGGCACACGGGCGAAAAACCTTACAGCTGTGACGTCTGTGGCAAAAAGTTCGCGCGCATGGACCTGAGCGCGCACAAGCGGCTGCACGCGGGCGCGCGGCCGCACGCCTGCAGCGCCTGCCCCAAGGCCTTCGTCAACGCCGCGCGCCTACGATCGCACTGCCGCATGCACACTGgtGAAAAACCATTCGAGTGTGCGACCTGCGGTAAAACATTTGCGGCCAAATCTCACTTAGCGCAGCACGTAAAGAAACATCAGTCGACGAAGAAACAAGACAAAAAGGACATCGTCATAGTCCAGCAAGTCGCTTACAACGGCCAAATGTTCGTCAGCAACATTATCACTGACGGCAAACAGAATGAACAGACAGAAGAGGCTTCAGTCATAGCTGAAACTAAATGTGAAGAGCCAAATAACGATATTACATTAGAATTAGCTCAAGACATGCCATTAGAAGTCACAGGTGAATTGGTTGTTCAAGATGATTGTGATGTTAAGGAGATTTTAGTTGTGGACAATAGTCATAATGAAACTAGTTACCAAAGCGGAAATGTATGTTTGAATACTGGAGAGATCGGGGAAATAAATTATTCCAACAGTGACGTCAACTTGGTGACAGTCAATGAGGGCACCACAGTAAAGTTATATCAACTGGATCAGAGTCTAGTCCAAATACATAGTTCTGGTGGTCAGGTCACCATCAGCAAAATTACTAGTAAAATGACTGCTAACTTTTAA
Protein Sequence: MDPDISNASKEKVMGDNNSPYNCGPEQIEIPFHIFQDLSSKSLKVQSLCRICLKSLGNDDMIPLRSTYYETETLVDIIKLFTSIQINLNDVLPLNICITCQADVIHCYKFKIKFEKSEYILQTLMKEQFMLTQDADNINSDTCVNNSTICKDEVKEETIEDMDEQYLEDNVNFSSDDEALCIVQNTGNKVKDELEITITDSKSLLKKVMSHKESPDKQKSCSFCHKKFSKIKNLRDHIRRKHSSDEHSHPCTKCKEIFSSEHDLKVHSAVHSTGPPWSCNTCEKVFKAKPKLRRHLQRHMQAKRFACACGKAFSELYALRRHARVHTGQAPDKKHACPVCDKRYSESSALAQHVAGHRGERPCVCAVCGKAFASARLLRSHRRVHSDAKPHACRYCPKRFRHESTRNTHHRTHTGEKPYICAACGKAFIQNSNLTLHMRTHTGEKPYSCSKCEQKFTSRSSLKAHLRRHTGEKPYSCDVCGKKFARMDLSAHKRLHAGARPHACSACPKAFVNAARLRSHCRMHTGEKPFECATCGKTFAAKSHLAQHVKKHQSTKKQDKKDIVIVQQVAYNGQMFVSNIITDGKQNEQTEEASVIAETKCEEPNNDITLELAQDMPLEVTGELVVQDDCDVKEILVVDNSHNETSYQSGNVCLNTGEIGEINYSNSDVNLVTVNEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125687;
90% Identity: iTF_01125687;
80% Identity: -