Ofur006870.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:1564258-1571109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.072 13.3 6.5 1 23 158 180 158 180 0.98 2 13 0.0018 0.091 13.0 5.0 1 23 185 208 185 208 0.95 3 13 0.0005 0.025 14.8 1.1 2 23 263 285 262 285 0.93 4 13 0.0015 0.075 13.3 0.3 1 23 309 331 309 331 0.98 5 13 5.1e-05 0.0025 17.9 3.7 2 23 339 360 338 360 0.96 6 13 0.0026 0.13 12.6 0.4 1 23 365 387 365 387 0.97 7 13 8.3e-05 0.0041 17.3 2.0 1 23 393 415 393 415 0.98 8 13 3e-08 1.5e-06 28.1 1.1 1 23 421 443 421 443 0.98 9 13 5e-05 0.0024 18.0 0.5 1 23 449 471 449 471 0.97 10 13 7.3e-06 0.00036 20.6 0.4 1 23 477 499 477 499 0.98 11 13 6.1e-06 0.0003 20.8 5.8 1 23 505 527 505 527 0.98 12 13 1e-06 4.9e-05 23.3 0.7 1 23 533 555 533 555 0.98 13 13 3.6e-05 0.0018 18.4 0.9 1 23 561 583 561 583 0.97
Sequence Information
- Coding Sequence
- atgtttgccgttccaaattttcAGAATATGGACAATTGTTGCCGAACTTGTTTGAATTCTTCATCAAACATGTACGATATTTTTGAATACCAAGTAGACTCGTATTTGTATGAGATTTTGGATGTATGCACAAATATAAAGGTGGACCGGCATGACGCTCTCCCAAAAAAGCTATGTAGCACCTGCTACGACTGCTTGATCAAGTTCTACGACTTTCGGAAACAGGCCAAAAAAATTGACAAAGATCTTCAACTCCACATTCAAGATGCCTCCAAATTGCCAGAAGAATTCATGACAATAGAAATCAAACCTGAAACTGATGATGATTCCAGAAACGACTTTGACCACGATTATAATGTGTCAACCGATCCAAAAAAAGAATTCCCATTTATATCCCCGGAGGATGGTTCTATCAAATTCCCATACAACAAATCTTATTATTCACCATCTCAACAACGTGATGACGTCAGATATTGTTGTGAATTCTGCAAAAAAACATTCCGACAACTAGATAAATACCGCCTGCATCTAAATAAACACAAATCAAAAACATATGTTTGTAATTTATGCCTAAAGACCTTTTCACACAAGTACAAATATTACAAACACTTAAACGATACACATAAGCCTAAACCAATAAAAACGTTTTTAGAAATAGACCAAAATGATGAAAACCAAAGAGTTGATTGTGATACTATTGCTGAAGGTATTAAGGCTGTAAATTCCTTGACTCGTCACCCACTGGGTCAATCAGAAAACGATAGTACGGCGTCTGGCAGAGTGCTATCTTGTTCCCACTGTTCTCAAGTCTTTAACAGAGTCAGCGACCTTGTAAGGCATGAGTCGGTCAAACATTTCAACCAAAATGAGCTGGAGAAGGCTGAGATATTTTCACAGATCGACCAATCAGATGAAAACAAAAACTTTGAATGTGATATTTGCCTTGCAAAATTCAAATCTGTGAACTCACTCTCAGCTCACAAACGGGTGCACATTGATAAAAGTAGGATCTTGTCCTGTTCATCATGTGGGAAAGTTTTCAAGAAAACGAACCATTTGAAACGTCATGAGATGACTCATGCGAATCGTCCTTTCAAATGTAACATGTGTCCAAAATCTTTCCTTTCTGAATCGATATTGAAGGAACATTTGAATGTGCACTGTAATTTGAAACCATACAATTGCTCTTTATGCCTGAAGTCATTCGCTTTCATATCGACTCTGAAGAAGCACTTGAAGACTCATACAAGAGAAAGGGGGTACATGTGTGCGATGTGTGGAAAGACATTCGATTCCAGCTCAAACCTAAATCAACATATGAAGAGACATATTGGATTGAAGTTGTTCTCTTGCAGTTTATGCCCACAAACGTTTGTGAgcaaaggAGAACTGAAATCCCACAATATCACTCACACTGGCGAGCGCCCGTATTCCTGCGACCAGTGCGGCGCGACCTTTGCCAAGCGCAACTCGCTCAGCAAGCATATGCTGGTCCACCTGGGCATCAGACCTCACCGGTGTGAAACCTGCTCCATGAGATTCTCAAGCAAAGACCACTTGAAGCGTCATATCCGCATCCACACTGGTGAGAAGCCGTACCGTTGCGATATGTGTGACCGCGCCTTTACGCAGAGCAACGACTTGGTCAAACATCGCCGGGCCCATTTGGGTGATAAACTTTACAGGTGCAGCGAATGCTCAGAAAGCTTTCGCTTGAAGACTGAACTTCGTCAACACATATCGGAACACTTCATATCGTCAAGGCTTCAAGCTCTGACCGTTAACAAAATTCCCACCCCCACAGACAACATAGAGAACGGTGAGCAAACTAACAACAATGATGTGCAGATAGAAGACAGAGAAGCTATGGAGAATGTAAGCAATGCCATGGAGAATGTAGGCAATGCCATGGAGAATGTAAGCAATGTCGTGGAGAATCCGAACAATGTTGTGAATATGATGGAAGATGTGCAAAATCCGAATATTCCCAACAATGGAACTATTGAACAGTAA
- Protein Sequence
- MFAVPNFQNMDNCCRTCLNSSSNMYDIFEYQVDSYLYEILDVCTNIKVDRHDALPKKLCSTCYDCLIKFYDFRKQAKKIDKDLQLHIQDASKLPEEFMTIEIKPETDDDSRNDFDHDYNVSTDPKKEFPFISPEDGSIKFPYNKSYYSPSQQRDDVRYCCEFCKKTFRQLDKYRLHLNKHKSKTYVCNLCLKTFSHKYKYYKHLNDTHKPKPIKTFLEIDQNDENQRVDCDTIAEGIKAVNSLTRHPLGQSENDSTASGRVLSCSHCSQVFNRVSDLVRHESVKHFNQNELEKAEIFSQIDQSDENKNFECDICLAKFKSVNSLSAHKRVHIDKSRILSCSSCGKVFKKTNHLKRHEMTHANRPFKCNMCPKSFLSESILKEHLNVHCNLKPYNCSLCLKSFAFISTLKKHLKTHTRERGYMCAMCGKTFDSSSNLNQHMKRHIGLKLFSCSLCPQTFVSKGELKSHNITHTGERPYSCDQCGATFAKRNSLSKHMLVHLGIRPHRCETCSMRFSSKDHLKRHIRIHTGEKPYRCDMCDRAFTQSNDLVKHRRAHLGDKLYRCSECSESFRLKTELRQHISEHFISSRLQALTVNKIPTPTDNIENGEQTNNNDVQIEDREAMENVSNAMENVGNAMENVSNVVENPNNVVNMMEDVQNPNIPNNGTIEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125683;
- 90% Identity
- iTF_01125683;
- 80% Identity
- -