Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:135386-143392[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8e-07 4e-05 23.6 0.4 1 23 194 216 194 216 0.97

2 14 0.00025 0.012 15.8 2.4 3 23 224 245 222 245 0.94

3 14 5.5e-06 0.00027 21.0 2.5 1 23 251 273 251 273 0.98

4 14 1.1e-05 0.00057 20.0 3.6 1 23 278 300 278 300 0.99

5 14 2.3e-06 0.00011 22.2 2.7 1 23 306 328 306 328 0.99

6 14 2.5e-07 1.3e-05 25.2 0.6 1 23 334 357 334 357 0.96

7 14 3.5e-07 1.8e-05 24.7 1.6 1 23 363 385 363 385 0.99

8 14 1.9e-05 0.00096 19.2 0.9 1 23 391 413 391 413 0.98

9 14 0.00089 0.044 14.0 2.0 1 23 419 441 419 441 0.99

10 14 1.2e-07 6.1e-06 26.2 0.7 1 23 447 469 447 469 0.98

11 14 6.6e-07 3.3e-05 23.9 2.4 1 23 475 497 475 497 0.98

12 14 0.06 3 8.3 2.9 1 23 503 522 503 522 0.95

13 14 1.4e-06 6.8e-05 22.9 0.7 1 23 528 550 528 550 0.98

14 14 0.64 31 5.0 4.0 1 21 556 576 556 577 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8e-07	4e-05	23.6	0.4	1	23	194	216	194	216	0.97
2	14	0.00025	0.012	15.8	2.4	3	23	224	245	222	245	0.94
3	14	5.5e-06	0.00027	21.0	2.5	1	23	251	273	251	273	0.98
4	14	1.1e-05	0.00057	20.0	3.6	1	23	278	300	278	300	0.99
5	14	2.3e-06	0.00011	22.2	2.7	1	23	306	328	306	328	0.99
6	14	2.5e-07	1.3e-05	25.2	0.6	1	23	334	357	334	357	0.96
7	14	3.5e-07	1.8e-05	24.7	1.6	1	23	363	385	363	385	0.99
8	14	1.9e-05	0.00096	19.2	0.9	1	23	391	413	391	413	0.98
9	14	0.00089	0.044	14.0	2.0	1	23	419	441	419	441	0.99
10	14	1.2e-07	6.1e-06	26.2	0.7	1	23	447	469	447	469	0.98
11	14	6.6e-07	3.3e-05	23.9	2.4	1	23	475	497	475	497	0.98
12	14	0.06	3	8.3	2.9	1	23	503	522	503	522	0.95
13	14	1.4e-06	6.8e-05	22.9	0.7	1	23	528	550	528	550	0.98
14	14	0.64	31	5.0	4.0	1	21	556	576	556	577	0.93

Sequence Information

Coding Sequence: atgacCGAGTTATGGAGCGCAAATGGTTTGTGCCGCTGCTGCCACGCAGAAGGCACCTTCAAGAGCCTAAGCGGATCATATTCTGTAAATGGAGTGGACGAAATATTGTCGACAATGCTTCGCGAGACTTTCGAAGTGAATATAGCGCCTTTGCCAGGAGAGATAGGAGCGAACACGTACAACATCTGTCCGCTATGCGAGCCGCGGCTGACAGACGCAGTGCTCTTCAAGAAGCAAGTCGTAGCGTGCGAAGAGAAGTTCATGAGGTATTACGCTGGGTGCGGTGTTAATGATGGAGAATCTTTTATGAAAGGTGTAAAATTAGAAGTAGGCAGTATTTCAGAAGGTCCAAAAGAAGAAACTctatttcctgacgaaaaagaCATTAAATACAATGATGAAGACAAAGTACCCTCAATGGAGATCTTCATCGAGACGGATTTGGAAGACCAGCCGCTGTCTACCCTCGCAAACAAACGGAGGGCCAGTGAGGATTCCTACAGGGATTGGGAGCCGGGACAGAGTGATACGGAGGAACCACaagaACAGAGCAAACAACGAAAGgcgaagtcgaaaaagttcgcTTGCGACATCTGCCAAAAGAAATTCACTTACAACGGTTCTTTAGAAGTACACATGAAGATTCACACTGGAGAAAAAACTCATTTGTGCCAATTGTGCAACACAAAGTTTGTCAACAGCAAAGACTTGACCAAACACATAGAAAGCACACACTCGGACAACGGCAAATATGTCTGTACAATTTGCAATAAGACGTTTGACAAAACAAGGCtgttaaaaaaacatctaaaatctCACTTCGATGACAAATTCAAATGTAGTTATTGCTCAAAAGAGTTCCAAAGGAAGAAAGGATTAAAAGAACACTTAAAAACGCATACCGGTGAGAGGAAATACAGCTGTGAAGTTTGTAACAAGTCGTTCGGGCATAACCAAACGTTGAAATCTCATATGCTCACCCACACCGGTGAACGGCCTTATGTTTGTGATGTGTGTGGAAGACGGTTCCCCCAAAGGACACACTTGAAAagacacataataataatacacacTGGAATGAAACCGTATTCCTGTAAAATCTGTAACAAGCAGTTCTCGAGCAAAAGTTATTTGGCAATCCATGAACGGACCCATACGGGTGAACGACCGTTCTCATGTGAAGTTTGTAAGAAGGATTTCACAGCATACACAACGTTGAAAGTGCATATGAGAGTGCATACTGGTATTAAACCGTATACTTGCAGTTTCTGCAGCAGGCAGTTCGCTCAAATGGCCAGTTTTAAATTGCATGAAAGGACTCATACCGGTGAAAAGCCGTTTTCATGTAAAGTTTGTAAGAAACCGTTCTCTGATAATGGATACTTGAAGATTCATATGAGAGTGCATACTGGAGAGAAGCCCTATCCATGCGAGATTTGTAAAAGATGTTTCCGCGAAACCGGCCAGCTAAAACGTCACATGCGAGTCCACACGGGCATCAAACCTTACACCTGCAAGATATGCAACAAGCAAATAGGAAATCTATCCAAACACATGCGTGTGCACTCTGACGAACGGCCTTATAATTGTACTGTGTGTAATAAACAGTTTTCTATAAGTGGGAATTTGAAATTGCATATGAGGATACATACGGGGGAGAAACCGTTTTCGTGTGAAATGTGCTGTAGCCAGTTCGCTCAGAGCAGTGCGTTGAAAAGGCATAGGTGCAATAGGCCTAGTGATGGCTGA
Protein Sequence: MTELWSANGLCRCCHAEGTFKSLSGSYSVNGVDEILSTMLRETFEVNIAPLPGEIGANTYNICPLCEPRLTDAVLFKKQVVACEEKFMRYYAGCGVNDGESFMKGVKLEVGSISEGPKEETLFPDEKDIKYNDEDKVPSMEIFIETDLEDQPLSTLANKRRASEDSYRDWEPGQSDTEEPQEQSKQRKAKSKKFACDICQKKFTYNGSLEVHMKIHTGEKTHLCQLCNTKFVNSKDLTKHIESTHSDNGKYVCTICNKTFDKTRLLKKHLKSHFDDKFKCSYCSKEFQRKKGLKEHLKTHTGERKYSCEVCNKSFGHNQTLKSHMLTHTGERPYVCDVCGRRFPQRTHLKRHIIIIHTGMKPYSCKICNKQFSSKSYLAIHERTHTGERPFSCEVCKKDFTAYTTLKVHMRVHTGIKPYTCSFCSRQFAQMASFKLHERTHTGEKPFSCKVCKKPFSDNGYLKIHMRVHTGEKPYPCEICKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERPYNCTVCNKQFSISGNLKLHMRIHTGEKPFSCEMCCSQFAQSSALKRHRCNRPSDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01279502;
90% Identity: -
80% Identity: -