Ofur006922.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:5-2936[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 7.8 3.9e+02 1.6 0.7 15 23 4 12 1 12 0.85 2 23 3.3e-06 0.00016 21.7 5.6 1 23 18 40 18 40 0.98 3 23 7.2e-05 0.0036 17.5 1.7 1 23 46 68 46 68 0.96 4 23 0.0029 0.14 12.4 7.0 1 23 74 96 74 96 0.98 5 23 0.0029 0.14 12.4 7.0 1 23 102 124 102 124 0.98 6 23 5.7e-05 0.0028 17.8 5.6 1 23 130 152 130 152 0.98 7 23 0.00053 0.026 14.7 5.2 1 23 158 180 158 180 0.98 8 23 2e-05 0.00098 19.2 2.3 2 23 187 208 186 208 0.97 9 23 0.00014 0.0071 16.5 4.7 1 23 214 236 214 236 0.98 10 23 0.00013 0.0064 16.7 2.6 1 23 242 264 242 264 0.98 11 23 4.1e-06 0.0002 21.4 1.3 1 23 270 292 270 292 0.98 12 23 0.0002 0.0098 16.1 0.7 1 23 298 320 298 320 0.98 13 23 5.7e-05 0.0028 17.8 5.6 1 23 326 348 326 348 0.98 14 23 2.2e-05 0.0011 19.1 0.6 1 23 354 376 354 376 0.98 15 23 2.2e-05 0.0011 19.1 0.6 1 23 382 404 382 404 0.98 16 23 8.3e-06 0.00041 20.4 2.4 1 23 410 432 410 432 0.98 17 23 3.6e-05 0.0018 18.4 1.9 1 23 438 460 438 460 0.98 18 23 0.0017 0.084 13.1 0.3 1 23 466 488 466 488 0.98 19 23 0.0001 0.005 17.0 3.5 1 23 494 516 494 516 0.98 20 23 0.0034 0.17 12.2 2.3 1 22 522 543 522 546 0.89 21 23 3.9e-05 0.0019 18.3 5.5 1 23 552 574 552 574 0.98 22 23 5.7e-05 0.0028 17.8 6.8 1 23 580 602 580 602 0.98 23 23 0.00019 0.0095 16.1 6.1 1 23 608 630 608 630 0.98
Sequence Information
- Coding Sequence
- AGTAATGCGAGGTTGAAACGCCATAGACGTGTGCACACGGGCGAGAAACCATTCTCATGCGAACATTGCTCGAAAACATTCGCATACAAAGCTCATTTAACTACTCATATACGGAGACATACAGGTGAAAAATCGTTCTTATGTAACTATTGTCATTACAAGACTGCtgtaaaatcagatttaattaaacatatACGGATACACACAGGTGAAAAATCGTTCTCATGTACCTATTGTCATTACAAGACcgcattaaaatgtaatttaactactCATATACGGACACATAAAGGTGAAAAACCTTTCTCATGTACCTATTGTCATTACAAGACcgcattaaaatgtaatttaactactCATATACGGACACATACAGGTGAAAAACCGTTCTCATGCAACTATTGCCATTATAAGACCACTCAAAAATCAACTTTAATTAAACACGAAAGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGCCATTATAAGACCACCCTAAAATCAACTTTAATTAAACACGAAAGGACACATACAGGTAAAAAACCGGTTTCATGTACCTATTGTCATTACAAAACTGCTAAAAAAGGAAATTTAATTAGACATATACGGACACATACAGGTGAAAAACCGTTCTCATGTACCTATTGTCATTACAAGACcgcattaaaatataatttaactactcATATACGGACACATAAAGGTGAAAAACCGTTCTCATGTAACTATTGCCATTACAAGACTGCTGCaaaatcatatttaattaaacatataCGGATACACACAGGTGAAAAACCGTTCTCATGTAACTATTGCGATTACAAGACTGCTGTACAATCTCAATTAACTACTCATATACGGACACATACAGGTGAAAAACTTTTCTCATGTGCCTATTGTCATTACAAAGCTGCtgtaaaatcagatttaattaaacatatACGGATACATACAGGTGAAAAACCGTTCTCATGTAACTATTGCCATTATAAGACTACTCAAAAATCAACTTTAATTAAACACGAAAGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGTGATTACAAGGCTGctttaaaatcagatttaattaaacatatACGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGTGATTACAAGGCTGctttaaaatcagatttaattaaacatatACGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGCCCTTATAAGACCACTCAAAAATCAACTTTAATTAAACACGAAAGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGTCATTACAAGGCTGCtgtaaaatcagatttaattaaacatatACGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGTCTTTACAAGGCTGCtgtaaaatcagatttaattaaacatgTACGGATACACACAGGTGAAAAACCATTCTCATGTACCTATTGTCATTACAAGACCGCATTAAAAGGTAATTTAACTACTCATATACGGACACATAAAGGTGAAAAACCGTTCTCATGTAACTATTGCCATTACAAGACTGCagtaaaatcagatttaattagacataataatatacggaGACATACAGGTGAAAAACCGTTCTCATGTAACTATTGCCATTATAAGACCACTCAAAAATCAACTTTAATTAGACACGAAAGGACACATACGGGTGAAAAACCGTTCTCATGTAACTATTGTCATTACAAGACTgctaaaaaacataatttaattagacATATACGGACACATACAGGTGAAAAACCGTTCTCATGTAACTATTGCCATTATAAGACTACTAAAAAATCAACTTTAATTAAACACGAAAGGACACATACAGGTGAAAAACCGATTTGA
- Protein Sequence
- SNARLKRHRRVHTGEKPFSCEHCSKTFAYKAHLTTHIRRHTGEKSFLCNYCHYKTAVKSDLIKHIRIHTGEKSFSCTYCHYKTALKCNLTTHIRTHKGEKPFSCTYCHYKTALKCNLTTHIRTHTGEKPFSCNYCHYKTTQKSTLIKHERTHTGEKPFSCNYCHYKTTLKSTLIKHERTHTGKKPVSCTYCHYKTAKKGNLIRHIRTHTGEKPFSCTYCHYKTALKYNLTTHIRTHKGEKPFSCNYCHYKTAAKSYLIKHIRIHTGEKPFSCNYCDYKTAVQSQLTTHIRTHTGEKLFSCAYCHYKAAVKSDLIKHIRIHTGEKPFSCNYCHYKTTQKSTLIKHERTHTGEKPFSCNYCDYKAALKSDLIKHIRTHTGEKPFSCNYCDYKAALKSDLIKHIRTHTGEKPFSCNYCPYKTTQKSTLIKHERTHTGEKPFSCNYCHYKAAVKSDLIKHIRTHTGEKPFSCNYCLYKAAVKSDLIKHVRIHTGEKPFSCTYCHYKTALKGNLTTHIRTHKGEKPFSCNYCHYKTAVKSDLIRHNNIRRHTGEKPFSCNYCHYKTTQKSTLIRHERTHTGEKPFSCNYCHYKTAKKHNLIRHIRTHTGEKPFSCNYCHYKTTKKSTLIKHERTHTGEKPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -