Oere009700.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- prdm10
- Assembly
- GCA_031763485.1
- Location
- JARFOC010000711.1:302541-311979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.2 50 6.9 0.5 1 23 421 443 421 443 0.97 2 12 0.66 1.7e+02 5.2 0.1 2 23 498 522 497 522 0.93 3 12 0.00095 0.24 14.2 2.8 3 23 538 559 537 559 0.96 4 12 0.0022 0.55 13.0 0.1 2 23 567 588 566 588 0.97 5 12 0.042 11 9.0 3.2 2 23 597 618 596 618 0.97 6 12 0.0087 2.2 11.1 0.2 1 23 625 647 625 647 0.97 7 12 0.0085 2.1 11.2 4.7 1 23 653 676 653 676 0.96 8 12 0.0011 0.27 14.0 3.3 1 23 681 703 681 703 0.97 9 12 0.0015 0.37 13.6 4.0 1 23 709 732 709 732 0.89 10 12 0.0092 2.3 11.1 1.6 1 23 768 791 768 791 0.97 11 12 0.00028 0.071 15.8 2.2 1 23 813 836 813 836 0.97 12 12 0.0023 0.58 13.0 3.4 2 23 872 894 871 894 0.96
Sequence Information
- Coding Sequence
- ATGGATGGTGTAACAGAAGAAAACTCAAATGAAACCATATCCTTGGCAGTGGATAGTTTGGTTTGGAATGGAACTTCAAACCCCAATAACCAAAACATATTGTATATAGCGGTGGAATatgtaaaagataaaattgatcAAGACAGTTCTTTGtcacaaaatgtttataatgaATTGGAGCAGCACGTTAGTCCCCTGGATCCAAATATGTGCTCTGTAGCGCAGTATAGCCCAGTATATGGATCAGAGTCATCAGCTTCGTATAACAATCCAATTGTTGTTGCACAGCTTGTAACTAATAATAATGCTGATATTTCCACACCCttgtcaatttcaaataattctaCTGAATTAGGTAGGGTATCCACCAAATATCTCCAGATGATAAATGAGCAATTGAGCAATGACTCGGCAGCTGAAACTGCTGCAATGCTACCACAAAATATTAACTCCGAACAAGACGTTGAGTTGTTAATTACAGACCAACATACAGGCATTTCGTATAGTGTAAGTACACAAGAATATTTAGTAGAGAGATGCCTAACTGATGAccaattattagaaaatttatctTCTGAGGCATTATTAAATGCAGATCTATTAGCTCTAGatgaaaatacattaaaatcatCTTTGCCTGAAATAATCATCGAAGCAAATAACCAGAAATCAAATAGTTCTGGAcaatacttaaataatataaaaaaaggaactaATGAACTAGTTGAAGTACGTAGATCTACTAGAAATATTGAGTGCAAACAATTAGAAATAGGTGAAAAGATCCTACCCCACATGCAATCAATAATAGACAAACCTGTTCTCACCAGAGCATGGGCTACTCTACCTGAAAATTATCtaagtattaataaattaccGAATGGAGGTACGGATAACGGAGTATTTGctaaaaagataatttataaatatacccaaTTTGGTCCATTGGAAGGTGTGTATCGAAAACGGGATTTTAAAACTGAAGATAATAAGCTGGAATTATTTGTTGAAGTGCATAATTCACAAGTGGTTAAATTAGATACATCAgatgaaaATTCTTCAAATTGGATGTGTTTTGTAAGAAAAGCTTTAACATACGAAGAACAAAATGTTGTTCTTATGCAACAAGACGGTTTACTATACTATgttacaaaagaaaacattttaccAAAACAAGAACTAAAAGTAGGATATAGTAGAATGTATGCTGTACATTACAATTCGCCTATGTTGGAACCAATTCCTAATGCGAGTAACATGTATCAGTGCTATGAATGTTCTGAAAAGTTACTTACTTCAGAAGAATTCCAAAAGCACTTAGATATCCATGATAAAATAAAAGGTGAAATGAAACAtcgcaaaaagaaaaagaaattgccaATTGCTAGAAATTTAAGACCTGAATTTGTCAATTGTGAAAATGTATATACTGATATCCGTGGTGATAGTAGAAAGTtactaaataatgttaatacttTTACAAAGCAATGGCGGTGTACTTTTATAGGTTGCGAAGTGATTTTTGAAGAAGAAGGGTTGTTAAATAAGCACTATACTAAAGCACACTCAACAACTGATATTAAAGAAGTTACCAAAAagaatttgaatatttgtaaTCACTGTCACGAAAAGTTTGCTActgaaaatgaattaaaaagtcACATTTCTGTGAAGCATAAAATTGttgagaagaaaaagaaatgccCTGTTTGCTATAAAGTTTTTGCATCAATCGATCGTGTGCAGAGTCACATGTTAGTACATGGATCAGATGAATTAAAACCACTTAAGTGCGATAAGTGTAATAAAAGATTCTTAAATAACAGCGCCTTAGCATGCCACTTAAAAACGCATATGCCCGGTAGAAAACAATTTGAATGCCCAATATGCAGGGAAACTTTTGATTATGTTCTCCTGTTAAAATTACATGTGCAACAACATTGCGTAGACGGACAGTACACATGTCCTCATTGTGAAAAGCATTTTTCTAAGTATAGCATCATCAGAAAACATATACGTGCTTTTCATTGTGAAAGGAGACATTACTGTACAAATTGTTCAAAGAATTTTCCTACTTTGGATAAGTTACGTATGCATCTTCTCAAACACTCAGATCATAGAGAATTTCTTTGTGCGGATTGCGGCAAGCAATTCAAGAGGAAGGATAAATTGAAAGAACATTGTAAGAGGATGCATTCAGAAGAAAGGGAAAACGCCGTACCTAAGCAAACGATTATCAATGTGCAAACATCAAAGAAATTTATACCAAAAGTGCAACCTACAGACTACCATAGATTTATATACAAATGCCACAGTTGTTTAGTTGGTTTTAAACGCAGAGGAATGTTGGTCAACCATCTAGCTAAGAGACATCCTGATATAAGCCCGCATTCAGTgccagaattaaatttaccaatATTACGAACCACTAGAGATTATTATTGTCAATACTGTGAAAAAGTGTATAAAAGTAGTAGTAAACGTAAAGCACATATTTTGAAGAACCATCCTGGCTCTGCATTACCTTTAAGTAACAGAAGACATGCAGCTACGTCCGATTTACCGAATCCAACATTTTCTCAAACAGTGGGCAGTGTTACTACGCATCCACAGTCGTGTCAATGGTGTCACAAGCAATATGCGAGTAAAGCTAAACTACTGCAACATCAAAGGAAAAAGCATTCTGATTTATTACTGACCCAACCTGTTGaaatgcaacagaaactaaGTAATGTTCACGTTAAAGTATCGGATGAGGAGTTGTTGGCCCATATAGGACAAGATTATCAATTGGTATCGATGGATACTTTTACACAACCAAATGAATCAGATTTGAGACTTTATAGGCTTTTGACAACAACTAACAACCAACATGAGAAGGTGGCCGTCGCACCGCTAGAGAAAGACCATCAAGCCAAGTCGAAGAGTTCAGCCGGGCGTCTCATTCTTACCCTAGGGACTGGTCGAGCTTGA
- Protein Sequence
- MDGVTEENSNETISLAVDSLVWNGTSNPNNQNILYIAVEYVKDKIDQDSSLSQNVYNELEQHVSPLDPNMCSVAQYSPVYGSESSASYNNPIVVAQLVTNNNADISTPLSISNNSTELGRVSTKYLQMINEQLSNDSAAETAAMLPQNINSEQDVELLITDQHTGISYSVSTQEYLVERCLTDDQLLENLSSEALLNADLLALDENTLKSSLPEIIIEANNQKSNSSGQYLNNIKKGTNELVEVRRSTRNIECKQLEIGEKILPHMQSIIDKPVLTRAWATLPENYLSINKLPNGGTDNGVFAKKIIYKYTQFGPLEGVYRKRDFKTEDNKLELFVEVHNSQVVKLDTSDENSSNWMCFVRKALTYEEQNVVLMQQDGLLYYVTKENILPKQELKVGYSRMYAVHYNSPMLEPIPNASNMYQCYECSEKLLTSEEFQKHLDIHDKIKGEMKHRKKKKKLPIARNLRPEFVNCENVYTDIRGDSRKLLNNVNTFTKQWRCTFIGCEVIFEEEGLLNKHYTKAHSTTDIKEVTKKNLNICNHCHEKFATENELKSHISVKHKIVEKKKKCPVCYKVFASIDRVQSHMLVHGSDELKPLKCDKCNKRFLNNSALACHLKTHMPGRKQFECPICRETFDYVLLLKLHVQQHCVDGQYTCPHCEKHFSKYSIIRKHIRAFHCERRHYCTNCSKNFPTLDKLRMHLLKHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENAVPKQTIINVQTSKKFIPKVQPTDYHRFIYKCHSCLVGFKRRGMLVNHLAKRHPDISPHSVPELNLPILRTTRDYYCQYCEKVYKSSSKRKAHILKNHPGSALPLSNRRHAATSDLPNPTFSQTVGSVTTHPQSCQWCHKQYASKAKLLQHQRKKHSDLLLTQPVEMQQKLSNVHVKVSDEELLAHIGQDYQLVSMDTFTQPNESDLRLYRLLTTTNNQHEKVAVAPLEKDHQAKSKSSAGRLILTLGTGRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308355;
- 90% Identity
- -
- 80% Identity
- -