Oere053439.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- ZEB1
- Assembly
- GCA_031763485.1
- Location
- JARFOC010057514.1:6865-7893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.1e-05 0.015 17.9 0.7 2 23 43 64 43 64 0.97 2 10 0.32 79 6.2 2.6 1 23 68 90 68 90 0.96 3 10 0.71 1.8e+02 5.1 0.9 1 23 95 118 95 118 0.93 4 10 0.0058 1.5 11.7 0.2 1 23 124 146 124 146 0.85 5 10 0.00031 0.079 15.7 3.0 1 23 154 177 154 177 0.96 6 10 2.4e-05 0.006 19.2 0.4 2 23 189 211 188 211 0.97 7 10 8.5e-06 0.0022 20.6 5.0 2 23 219 240 218 240 0.97 8 10 3.7e-05 0.0092 18.6 4.4 1 23 246 268 246 268 0.98 9 10 4.4e-06 0.0011 21.5 3.5 1 23 274 296 274 296 0.98 10 10 3.8e-06 0.00097 21.7 0.2 1 22 302 323 302 323 0.96
Sequence Information
- Coding Sequence
- ATGGAATATCAGAAATTTGGATcaaatttgaatgattttccACGCAAAATATGCAAGAATATACTAACAACGTTTCATTTTAGGAAACTTGCAACTCAGAAAGCACCAAAACGAAAAAACTTCCGCAGGTGTACCATTTGCCATCAGACTTTTGCGAACCTCGACGACTTGGAGATCCATTTCGCCACACACGACTTCAAATACGACTGCGGGATGTGTCCTGAACGTTTTAGATGTCTCTATCAATATTCTATCCACACGAGCAAGCACAACGATCAAAATTTTACGTGCAGCGCATGTAGTTATTGGACCGATAACAGGAGTAATCTTCTGTTGCACATCCACAATGTTCATCTGAAGAATTTCTTGTACTATTGTGGAGTATGTGGGAAAGGCTTTAATAGTAAGTGGGCCAAGTTGGAACATGAAGATCTACATAATAACATCGATAAGAAACCACACACATGTGTGGTATGTCAACAGAGATTCTCCTACTCCAAAAATCTGCTTTCGCATCAAATTAGGTACCACAACGCCATGGTAACAGGTACCTATTTGGAAAACCAATGCTCGGTATGCCAAAAGATCTTTGGAAAGAAAGCTACGTTAGAGAACCACATCAGAGTTAGCCACGATCTAAAATTGAAGCCGCAAATGTGCGATAAGTGTGGAAAATGTTTTCCGAACAACCACAAGCTGGAACTGCACTACAGAACTCACACCGGTTTAAAACCATTCTCGTGCCAGTTTTGTAAGAAGTGTTTTAGGACGAAGCAATTGCTAGAAGAGCACGCTCGCATACACACAGGCGAGAAACCTTATCCGTGCAAATTTTGCGGAAAATGCTTCAACCAGAGGACTCCACTGAAGGTCCATACTCGCatgcatactggagaaaaaccttacGTTTGCCAAATTTGCAATAAGGGTTTCACATCCAAAGGAGCCCTTACCATACACACAAGACGCTGCGATGGTGGTAAAGTGAAGAAGGAAGGGACAGAAGACGAATCAGATAATTATAGATAG
- Protein Sequence
- MEYQKFGSNLNDFPRKICKNILTTFHFRKLATQKAPKRKNFRRCTICHQTFANLDDLEIHFATHDFKYDCGMCPERFRCLYQYSIHTSKHNDQNFTCSACSYWTDNRSNLLLHIHNVHLKNFLYYCGVCGKGFNSKWAKLEHEDLHNNIDKKPHTCVVCQQRFSYSKNLLSHQIRYHNAMVTGTYLENQCSVCQKIFGKKATLENHIRVSHDLKLKPQMCDKCGKCFPNNHKLELHYRTHTGLKPFSCQFCKKCFRTKQLLEEHARIHTGEKPYPCKFCGKCFNQRTPLKVHTRMHTGEKPYVCQICNKGFTSKGALTIHTRRCDGGKVKKEGTEDESDNYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01124101;
- 90% Identity
- -
- 80% Identity
- -