Oere000211.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- Zfp42
- Assembly
- GCA_031763485.1
- Location
- JARFOC010000018.1:81079-82164[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.031 17.0 3.6 2 23 36 58 35 58 0.95 2 11 0.041 10 9.0 0.1 1 23 78 100 78 100 0.98 3 11 0.6 1.5e+02 5.4 4.4 1 19 103 121 103 125 0.93 4 11 0.00023 0.057 16.1 0.4 1 23 130 153 130 153 0.98 5 11 2.8e-06 0.00071 22.1 0.1 1 23 159 181 159 181 0.97 6 11 0.0047 1.2 12.0 0.9 1 23 187 210 187 210 0.94 7 11 0.00012 0.03 17.0 0.3 2 23 222 243 221 243 0.97 8 11 1.6e-06 0.0004 22.9 1.6 3 23 255 275 253 275 0.96 9 11 2.3e-05 0.0058 19.2 1.1 1 23 281 303 281 303 0.98 10 11 1.4e-06 0.00035 23.1 1.1 1 23 309 331 309 331 0.97 11 11 0.00043 0.11 15.2 0.7 1 20 337 356 337 358 0.94
Sequence Information
- Coding Sequence
- ATGTCCTGGGAGACATCATCCGCAGATGAGAGAACGAACGATAGGAGACATAGATCCTCGAGAAGCCGGATGAGAAAGCGATCCTATACAGCCGAGAAGAAATGGCCCTGCAAGAAGTGTAGCGAGTGTTTCTCGACGGTGCGCCAACTGCGAAAGCATCGCCGGGAAACCCACAGgagaaatgttaatataaacCGGTGTAATTTCTCTTATAACCAACCGGAGGGGATTTACGCATGTAATAACTGCGCCGTGAAGTCCAGATCGGAATCAGAGATGGAGGAACACGTCCAGACTCATGAAGCGTACGTCTGTTCGATTTGCAATAACAAATTCTATTCGCTGTATAAATTCTCGGTGCACAATCAGTGCCACGACCCTAACTGCTTCAAATGTCCTCTCTGTGATTACCAGACAGCCCGAAAGACCGCTATTTTGAGACACATAAATACCAATCACCTCAATAAGTACATTTACAACTGCAGTATCTGCGGAAAAGGATTCGAAGATGCGGCCAACTTTAGGGATCATCAAAATGGGCACGCGGGAGCTAAGGCTTTCTCTTGCATCGTATGCCAGAAAGAATTCCCTTTTAACCGATACTTGTTGGCACACCAGAAGAGGAATCATATGGTCACCATTGACGGTATACTATTACCGAACCAATGCGGCGTTTGCAGGAGGATCTTGTCCAAACCATCAAATTTAGAGAAGCACATGATACAACATGACGCCGCTTTTTTACAGGCGACGCACCATCTTTGCGATATATGCGGAAAGGGCTTCGCCCGCAAGGATAAGCTACGCCTCCATTACAGGATGCATACGGGAGTTAAGCCGTATAATTGCAGTTATTGTACCAAATCCTTTGCCAAACGCGAATATCTGGTGATGCACGAGCGCATCCATAGTGGCGAGAAACCATTTTCGTGCGAATTCTGCGGGAAGGCCTTCAATCAGAGGACGTCCCTGAAGACCCACGTTCGCGGTCACACCGGTGAAAGGCCCTACGTTTGCCACATCTGCAAGACCGGCTTCATCTCGAAGAATTCGCTTAATTTGCACTTTAAAGCTTGTAAcggttga
- Protein Sequence
- MSWETSSADERTNDRRHRSSRSRMRKRSYTAEKKWPCKKCSECFSTVRQLRKHRRETHRRNVNINRCNFSYNQPEGIYACNNCAVKSRSESEMEEHVQTHEAYVCSICNNKFYSLYKFSVHNQCHDPNCFKCPLCDYQTARKTAILRHINTNHLNKYIYNCSICGKGFEDAANFRDHQNGHAGAKAFSCIVCQKEFPFNRYLLAHQKRNHMVTIDGILLPNQCGVCRRILSKPSNLEKHMIQHDAAFLQATHHLCDICGKGFARKDKLRLHYRMHTGVKPYNCSYCTKSFAKREYLVMHERIHSGEKPFSCEFCGKAFNQRTSLKTHVRGHTGERPYVCHICKTGFISKNSLNLHFKACNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308303;
- 90% Identity
- -
- 80% Identity
- -