Oere006649.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- -
- Assembly
- GCA_031763485.1
- Location
- JARFOC010000501.1:27890-29393[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0084 2.1 11.2 0.3 1 19 131 149 131 151 0.95 2 11 0.0001 0.026 17.2 3.1 1 23 184 207 184 207 0.96 3 11 0.00035 0.088 15.5 0.3 2 23 214 235 213 235 0.94 4 11 0.00039 0.099 15.4 4.3 2 23 243 264 243 264 0.94 5 11 0.00011 0.027 17.1 0.2 2 23 270 292 269 292 0.95 6 11 3.1e-06 0.00077 22.0 1.4 1 23 296 318 296 318 0.98 7 11 6.7e-07 0.00017 24.1 0.2 1 23 324 347 324 347 0.98 8 11 2.1e-06 0.00052 22.5 0.4 1 23 353 375 353 375 0.95 9 11 0.014 3.6 10.5 0.6 3 23 385 407 383 407 0.92 10 11 6.2e-05 0.016 17.9 6.3 1 23 413 435 413 435 0.98 11 11 9.7e-06 0.0024 20.4 7.7 1 23 441 463 441 463 0.98
Sequence Information
- Coding Sequence
- ATGATGGATATATGCAGATTATGTTTAAGTAATGTACCAAATTCTTCTAATATAATCATTCACAAAGACGACATTTCAAATGaaacgaaaattaaattaattatacccGAAATCGACATCGGTATTACCACAAGTCTTATTTTATGTGAACTCTGTTCGCATCTTCTGAGTGCGGCATACACATTTAAATGCGGATGTTTGAAAACAGAGGAATTAATTCAGAAATATGTTGCCGAACATGACAATGCTGCACCATTAAATTTGAATGATGTTAAGGAATTTAGGGACAGAATAAATGAGGCGGAAAATACAAATTGCATTATAACCAAAGGGGAGATATTAGATGTTAGTGTCACAAAAGTGGATATAAGAGAGCAGTtaggtataatttatatttgtgatAAGTGTAACAATAGTTTTGAGGATGAAAACTTGTTGAAGACACATAAAGAtgaatgtaaattatataaatgcagTGAATATGATACAAAATCACCTGCAAAAGAAGGTCTGGATAAGCACTATCATGAACATACATTAGCAAAACTATTTAAATGCTTGCAATGTggaaaagtatttcaaaaactaCACGAATTAACAAAGCATACATTAAGCAATCATTCGAAAGCAGCACCTGTGACGTGTGATATTTGCCATAAAGTATATCCATCTGAGAAGTCGCtgcaaatacataaaattgCACACAAAATTACTGAAAGAACCAACACATGTCACCTTTGTGGGAAAACTTTCTATCAACTACAACATCTAAAATACCACTTGGGACAGCATAAAAAGGAACCACAGCCATGTGAGATTTGTGGCCTTACTTTTGGTGCACCATCAATGTTAAGACACCACATGgcaaaaaaacattataaaccGTTTGTTTGCGAGACATGTGGTTTGAAATGTAGTTCAAAAAGTGGTCTCACCGAACACATACGGACACATACAGGGGAACGACCATTCAGATGTGAAGTGTGTGGGAAAGGTTTTGCACAGAGAGGTACACTGACGGTTCATATAAAATCGCAACATGAAAAGGCAAAACCATTCATTTGTGAAACATGTGGCAAAACGTTCACATCTAGAGGGGGCTTAACAAAGCATACAGTAGTACACATGGAGGATAGAGAAAAGAACCTTCCATGCCAAATGGAGAATTGTAACAAAATGTTCTGGTCGAAGCGAGATCTCGTACAACACATGTTCAGGCATACGGCTGAGAGAAAGCATAAATGCAGCATTTGCGAAAAAACGTTCTTTGGTAATCATAAGTTGCGGCTGCATATGCGAACTCATACGGGTGAGAAACCGTATGAGTGCCATACATGTCATAAAACATTTAGTCAGCGATAcaatttacaaatacatttcaaatcgCATAGGCCAAAAGTGAAGAAAGATAGGGGAACTGCCAATCAGGATTTAACAAATTAG
- Protein Sequence
- MMDICRLCLSNVPNSSNIIIHKDDISNETKIKLIIPEIDIGITTSLILCELCSHLLSAAYTFKCGCLKTEELIQKYVAEHDNAAPLNLNDVKEFRDRINEAENTNCIITKGEILDVSVTKVDIREQLGIIYICDKCNNSFEDENLLKTHKDECKLYKCSEYDTKSPAKEGLDKHYHEHTLAKLFKCLQCGKVFQKLHELTKHTLSNHSKAAPVTCDICHKVYPSEKSLQIHKIAHKITERTNTCHLCGKTFYQLQHLKYHLGQHKKEPQPCEICGLTFGAPSMLRHHMAKKHYKPFVCETCGLKCSSKSGLTEHIRTHTGERPFRCEVCGKGFAQRGTLTVHIKSQHEKAKPFICETCGKTFTSRGGLTKHTVVHMEDREKNLPCQMENCNKMFWSKRDLVQHMFRHTAERKHKCSICEKTFFGNHKLRLHMRTHTGEKPYECHTCHKTFSQRYNLQIHFKSHRPKVKKDRGTANQDLTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -