Oere039641.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- -
- Assembly
- GCA_031763485.1
- Location
- JARFOC010035721.1:1-5023[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00012 0.031 17.0 0.7 1 21 32 52 32 53 0.94 2 19 0.001 0.26 14.1 1.1 2 23 62 83 62 83 0.97 3 19 0.00036 0.092 15.5 3.9 1 23 89 111 89 112 0.96 4 19 0.00016 0.04 16.6 0.7 2 23 118 139 117 139 0.97 5 19 1.5 3.9e+02 4.1 5.5 1 23 146 168 146 168 0.97 6 19 0.0013 0.32 13.8 0.1 3 23 176 196 175 196 0.97 7 19 2.1e-07 5.3e-05 25.7 0.3 1 23 202 224 202 224 0.98 8 19 1.1e-06 0.00029 23.4 0.1 1 23 230 252 230 252 0.97 9 19 1.4e-06 0.00035 23.1 0.5 1 23 258 280 258 280 0.97 10 19 0.0041 1 12.2 0.4 1 23 286 309 286 309 0.95 11 19 6.1e-06 0.0015 21.1 0.4 1 23 401 423 401 423 0.97 12 19 1.6e-05 0.0041 19.7 0.1 1 23 429 451 429 451 0.98 13 19 2.4e-05 0.0061 19.2 0.3 1 23 457 479 457 479 0.97 14 19 0.031 7.8 9.4 0.4 1 21 485 505 485 507 0.86 15 19 5.3e-06 0.0013 21.3 2.1 1 23 513 535 513 535 0.97 16 19 6.4e-06 0.0016 21.0 1.8 1 23 541 563 541 563 0.97 17 19 4.3e-07 0.00011 24.7 0.8 1 23 567 589 567 589 0.98 18 19 3.2 8e+02 3.1 0.5 10 23 603 616 601 616 0.92 19 19 0.0068 1.7 11.5 4.1 1 23 622 644 622 644 0.98
Sequence Information
- Coding Sequence
- CTTATACCAGCACAGATAAAAGTCGATGATATAGAGGAGGGCCCTTATGCCGTAACAGCAGTGCACTTTACACAAGAAGAGAATTGCGCAGAGTTCATATGCGAAAAGTGTGGAAGAACGTTTAAGAAAAGGGAAAGCTATAACGCCCACAAAAAAGCAATACAACAAAAGAGTCAGGACAACAGGTGCGAATTTTGCGACGAGTTCTTCGTGAATTGTGAAAATTTAGCCATACACAGGGCGCGACACAcgaaagaatttaaatatatgtgcGACAAATGCGAGTGCGGCTTTATTCGGCCGTACGATTTAAAGCTTCACCAGAAAAACCATCATAGTAAGCTTCCGGTTTCTTGCGATAAATGCGGGAAAACATTCCTGCTCAAGAAAGATCTCACGAGCCACATGATAACGCACGACACTAACAGGAAGAAGTACGCGTGCAAAATATGCTCGGCCCTGTTTCGTTGTAAGAGTTCCTATTTGCGTCACCTGCATCGCCACCCAGGTACGACACGGAATATCTGTGAGATATGTGGCAAGAGGATGAGTACAGCTGCTTCGTTGGTCATTCATAAGCAGACACATagtggagaaaagccgttcgtttgcgacatttgCGGAAAGACTTTCGCTCAGAAGAAGAATCTTACAGGACATGTACGGTTACAttctggagaaaaaccgttcgcctGCGACATTTGTGGAAAAGCTTTCACCTGGAATTCAGATCTTACCAGACATTTGCGGATACAtacgggagaaaaaccgttcgcctGCGACATTTGTGAAAAGGCTTTCAGCAGGGAACCACATCTTACGACACATTTGCGGATACACActggagaaagaccgttcgcttgcgacacttgtggggaTGGTTTTATCACCAAATCACGGCTTAAGcaacatACCATGTACGGACACATTCTGGAGAAAATCCGCCTGTCTGCGACATTTGTGGAAATGCTTTCACCGGGAATTCGGATCTTATCAGACATTTGCGGATACATATTGGAGAAAAATCGTTCGCCTGCGGCATTTGTGGAAAGgtttatgCCAGCACAGATAAAAGTCGATGATATAGAGGAGGGCCCTTATGCCGTAACATtagtgcattttacacaagaagatttggaacgccacaatgAAACAATGATTCAAGCTGGTGCAGGGTTTACATGTGAAGGAGAAAAAGCATTCGCCTGCGACATTTGTGGAAAGGTATTCACCATAAAGACAAGTATTAAGAAACATTtgcggatacatactggagaaaaaccgtacGCATGCGACATTTGTGGGAAGGCTTTTAGCTGGAAAGGCGATATTACGAGACAtttgcggacacatactggagaaaagccgttcgccTGTGAcatttgtggaaaggctttcagcTGGAAAACAGATATTACGAGACATTTGCGGACACATGCCAGAGAAAAGCCGTTCGCCTGCGACATTTGTGGAAAAGCTTTCGGTTGCAAAGCGGATATTACGAGACATTTGCCGACACACACTAGAGAGAGGCCGTTCGCCTGCGAcatttgtggaaaggctttcacccggaaGAGATGCATTACGAGACATTTACTGACACATACTAAAGAAAAACCGTTCGCCTGCGACGTTTGTGGAAAGGCATTCACCCGGGAAAGATGTATTACGAGACATTTACGGACACATACTAAACGGTTCGTCTGCGAGATTTGTGGAAAGGTTTTCGGCCGGAAGGCGCACATTACCAGACATTTGCAGACACATACTGGAGGAAGGCCTTTCGTTCGTGACACTTGTAATGCTTTTATGAGGAAATTAAATCTGACCAGTCATGCAAAGACACATACCAAAGAGAATCTTCACAAATGCAGATTTTGTGGTAGCAGATTCGCGTACCTTCGAACTCTAAAGTCACATTTGCGTCTGCATACTGGTTAG
- Protein Sequence
- LIPAQIKVDDIEEGPYAVTAVHFTQEENCAEFICEKCGRTFKKRESYNAHKKAIQQKSQDNRCEFCDEFFVNCENLAIHRARHTKEFKYMCDKCECGFIRPYDLKLHQKNHHSKLPVSCDKCGKTFLLKKDLTSHMITHDTNRKKYACKICSALFRCKSSYLRHLHRHPGTTRNICEICGKRMSTAASLVIHKQTHSGEKPFVCDICGKTFAQKKNLTGHVRLHSGEKPFACDICGKAFTWNSDLTRHLRIHTGEKPFACDICEKAFSREPHLTTHLRIHTGERPFACDTCGDGFITKSRLKQHTMYGHILEKIRLSATFVEMLSPGIRILSDICGYILEKNRSPAAFVERFMPAQIKVDDIEEGPYAVTLVHFTQEDLERHNETMIQAGAGFTCEGEKAFACDICGKVFTIKTSIKKHLRIHTGEKPYACDICGKAFSWKGDITRHLRTHTGEKPFACDICGKAFSWKTDITRHLRTHAREKPFACDICGKAFGCKADITRHLPTHTRERPFACDICGKAFTRKRCITRHLLTHTKEKPFACDVCGKAFTRERCITRHLRTHTKRFVCEICGKVFGRKAHITRHLQTHTGGRPFVRDTCNAFMRKLNLTSHAKTHTKENLHKCRFCGSRFAYLRTLKSHLRLHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -