Oere016758.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- -
- Assembly
- GCA_031763485.1
- Location
- JARFOC010004763.1:4747-10619[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.1e-05 0.0079 18.8 0.6 1 23 132 155 132 155 0.94 2 20 6.2e-05 0.016 17.9 1.5 1 23 190 213 190 213 0.94 3 20 1.9e-05 0.0049 19.5 0.9 1 23 219 242 219 242 0.95 4 20 0.00044 0.11 15.2 1.0 2 23 249 270 248 270 0.97 5 20 0.00066 0.17 14.7 1.8 1 23 276 299 276 299 0.96 6 20 5.2e-05 0.013 18.1 0.4 1 23 304 326 304 326 0.96 7 20 6.2e-06 0.0016 21.1 0.6 3 23 337 357 335 357 0.95 8 20 3.1e-06 0.00078 22.0 0.1 3 23 365 385 364 385 0.98 9 20 6.5e-05 0.016 17.8 0.6 1 23 391 413 391 413 0.97 10 20 6.2e-07 0.00016 24.2 1.7 1 23 419 441 419 441 0.98 11 20 4.9e-05 0.012 18.2 0.4 3 23 449 469 447 469 0.97 12 20 0.011 2.8 10.8 2.0 1 17 514 530 514 537 0.81 13 20 5.9e-06 0.0015 21.1 2.1 1 23 543 565 543 565 0.99 14 20 0.98 2.5e+02 4.7 6.2 1 23 571 593 571 594 0.95 15 20 1.2e-06 0.00029 23.3 3.9 1 23 599 621 599 621 0.98 16 20 0.00034 0.086 15.6 3.3 1 23 628 650 628 650 0.98 17 20 0.00023 0.059 16.1 0.5 1 23 656 678 656 678 0.97 18 20 4e-07 0.0001 24.8 0.5 1 23 684 706 684 706 0.98 19 20 0.00036 0.09 15.5 3.4 1 23 712 734 712 734 0.98 20 20 0.028 7.2 9.5 1.8 1 23 740 764 740 764 0.91
Sequence Information
- Coding Sequence
- ATGCAAGGGAGCCACCAAAAAGGTGCCCTGGTGGACATCAGCAAACATCAGAAGGGAAGTCGGGGAAAGTTCAATAGAACCAATAGAACTAAGAAAACTTCAGTATGGGATGAATACCAAAAGGTCCTTGTCGATTACAACAAAGCTTTGAGAAATACGATAAAGAGAATCCTGGAGGAGAAAGAGAAGATTATACCACAACGTGAGATGAACCGATCAGGAAGCTCTTTAGGGTCCGTTTCCCTGATTCCCAAATCACAAATTCATTACTGCAACAATGCAGAACTAGAACCTGCTAGACAGGCATCCAGTGAGCACTTGCTGCTAGAAAAGGAAGATTCCAGGAATATTAAACCAGTCGAGCACCAAGTGGGAATAAACGAAATTGGACCATATCGTTGTGATGTTTGTGGAAAACCCTATCATCAAAAGCAGTTACTAGAAAGACACCAAATAGGTGAACATTGCGTGACGACTATATGTTGTCCGCTATGTTGTAAAGTCTTTCTATGGCGACGTAGCTTGAGGTTTCACAAGCGTACAATGCACGAATCTCAACGTAATGCCCACCCATGTAAAATTTGCCCTAAAACTTTTCGTGCCAAAAAATATCTGAGTCGTCATGTAAATCTGGTGCATCAGGCGAGGACTGACTTCGTCTGCGACATCTGCGAGAAATCCTTTAAGCAGAAGCGTTATTTCGAGGCACACAAGAGCGTCGTTCACGAGAAAACTGGTGATATCTCCTGCGATGTCTGTGGCAAGCAATTCCTCGTCAAATCGATGCTAGAGCATCACATGACGACCCATACGAGAAATTACAAGTTTAAATGCGACCAGTGCGATAAGGGTTTCAACTGTCCATCTACCTTAAAGTCCCACCAAGATGTCGAACATAATGGTCTTCGATTTACGTGcggtaaatgtaataaaatatttaaaaaccctGCCGCATACAAGAACCACGTGATCCAGCACGAACCGGGTCACGTTCGTAGGAAACACCTGTGTTCCATCTGCCCCAAAACCTTCACCGATGCGACGGCGTTGCGGACACATTTGATGATTCATCGGGGCGAGGCTAAGAACATATGCGAGATATGCGGAAAGATTTATTCTTCCAAAACCGCGTTAAGGGAACACATTCGTATTCATACCGGGGAAAAGCCgtacgtttgcgacacttgtgggaaagCCTTCACTAGCAAGAAGTTCATCAAAACGCACGTACTGATCCACACTAAGGAGAAACCTCACAAGTGTGATCTTTGCGGAAAAGGTTTTACGCAGAGGTCGACCCTAACGATCCACTTGCGTTGGCACAGTGGGGAAAGACCTTACGGGTGTGAACTTTGCGAGAAGAGATTTATTACGAAATCGATGTTGAATAACCACGGAAGAGTCCATGGTACCGTGATGAAATTTGTACCAGCACAAATCAAAGTTGAAGATCTGGAAGAAGGTCCTTTTGCTGTAACATCAGTgtattttacacaagaagatatGGAACGCCATACTGAAAATGAGTATGGTGCAGGGTACACTTGCGAAGAGTGCGGAAGGCGTTTTAAGTCAAAACAAAGTTGTAACGGCCATAAAGCAGCAGTACACCAAATGAGCCAAGACTACAAGTGCGAATCGTGCGACAAGTTCTTCGTCAGCCGTTCATATTTGATCGCTCACAGGAAGAAACACGCGAAAGAATTCAAATACATGTGTGACAAATGTGAGTGTGGCTTTGTTTGGAAGAGAGATCTAAGAAACCACCATAACAATCACCATAGTACGCCGCAGTTTTCTTGCGATATATGCGGAAAAGCTTTCAAGCGCAAACATTGTCTCGCGAGCCACATGGAAACGCACGATTCTAACAGGAAGGAGTACGTGTGCGAGCAATGCCCGACCGTGTTCCATTTCAAGAGTTCCTATATGCGTCACAGGCGTCTGCACGAAGGTACGGCGCGGCATATCTGTGAGATATGTGGCAAGACGATGGCTACAGCCACTTACTTAATCGTTCATAAgaggacacatactggagaaaaaccgttcatttgcgacacttgtggaaagccTTTTATCTCCAAAACAAGTCTTAGGTTacatatacggacacataccaAAGAGAAGCCTCACAAGTGTCGGTTTTGCGGTAAAGGATTCTCAAAAACTGGAAAGCTAACGTTACATTTGCGTCTGCATACTGGTGAAAAGCCGCACCAGTGTCTATTGTGCGAAAGGAGATTTATAAGCACGACGGCATTACTCAGTCACTATAAGAAAATTAACCATAGCGTGGTAAAGAAATAA
- Protein Sequence
- MQGSHQKGALVDISKHQKGSRGKFNRTNRTKKTSVWDEYQKVLVDYNKALRNTIKRILEEKEKIIPQREMNRSGSSLGSVSLIPKSQIHYCNNAELEPARQASSEHLLLEKEDSRNIKPVEHQVGINEIGPYRCDVCGKPYHQKQLLERHQIGEHCVTTICCPLCCKVFLWRRSLRFHKRTMHESQRNAHPCKICPKTFRAKKYLSRHVNLVHQARTDFVCDICEKSFKQKRYFEAHKSVVHEKTGDISCDVCGKQFLVKSMLEHHMTTHTRNYKFKCDQCDKGFNCPSTLKSHQDVEHNGLRFTCGKCNKIFKNPAAYKNHVIQHEPGHVRRKHLCSICPKTFTDATALRTHLMIHRGEAKNICEICGKIYSSKTALREHIRIHTGEKPYVCDTCGKAFTSKKFIKTHVLIHTKEKPHKCDLCGKGFTQRSTLTIHLRWHSGERPYGCELCEKRFITKSMLNNHGRVHGTVMKFVPAQIKVEDLEEGPFAVTSVYFTQEDMERHTENEYGAGYTCEECGRRFKSKQSCNGHKAAVHQMSQDYKCESCDKFFVSRSYLIAHRKKHAKEFKYMCDKCECGFVWKRDLRNHHNNHHSTPQFSCDICGKAFKRKHCLASHMETHDSNRKEYVCEQCPTVFHFKSSYMRHRRLHEGTARHICEICGKTMATATYLIVHKRTHTGEKPFICDTCGKPFISKTSLRLHIRTHTKEKPHKCRFCGKGFSKTGKLTLHLRLHTGEKPHQCLLCERRFISTTALLSHYKKINHSVVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -