Oere030964.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- -
- Assembly
- GCA_031763485.1
- Location
- JARFOC010025280.1:1298-9873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00012 0.029 17.0 1.0 2 23 27 49 26 49 0.97 2 21 0.00075 0.19 14.5 0.3 1 23 54 77 54 77 0.88 3 21 8.5e-06 0.0021 20.6 3.7 1 23 83 105 83 105 0.97 4 21 9.2e-05 0.023 17.4 3.9 1 23 111 133 111 133 0.99 5 21 4e-05 0.01 18.5 3.6 1 23 139 161 139 161 0.97 6 21 3.3e-05 0.0082 18.8 1.8 1 23 170 192 170 192 0.98 7 21 0.0001 0.026 17.2 0.1 1 23 200 222 200 222 0.98 8 21 7.6e-06 0.0019 20.8 0.1 1 23 228 250 228 250 0.98 9 21 1.7e-06 0.00042 22.8 3.3 1 23 256 278 256 278 0.97 10 21 2.1e-05 0.0053 19.4 1.3 1 23 326 349 326 349 0.95 11 21 0.0011 0.29 13.9 1.4 1 23 355 377 355 377 0.96 12 21 2.3 5.8e+02 3.5 0.8 1 23 383 406 383 406 0.89 13 21 1.4e-05 0.0035 19.9 0.4 2 23 412 433 411 433 0.97 14 21 0.0011 0.28 14.0 2.1 1 22 481 502 481 504 0.88 15 21 1.7e-05 0.0043 19.7 2.0 1 23 510 532 510 532 0.98 16 21 1.2e-07 3e-05 26.4 2.0 1 23 542 564 542 564 0.98 17 21 0.0037 0.94 12.3 2.3 1 23 571 593 571 593 0.98 18 21 0.00016 0.04 16.6 0.2 1 23 599 621 599 621 0.97 19 21 6.1e-07 0.00015 24.2 1.3 1 23 627 649 627 649 0.98 20 21 0.00028 0.07 15.9 4.2 1 23 655 677 655 677 0.98 21 21 0.012 3 10.7 2.1 1 22 683 704 683 705 0.91
Sequence Information
- Coding Sequence
- CCTCCGTTGGAAAATCACTGCAATAACGGAGACGAATGTCCCTACTGTTTAAAAGTGCATTCGTGGAAGATAAAGAAACGCTGCGAGATTTGCTCGAAATTCTTCACCAGTGAAGAGACATTGGCGCAGCACAAGAGAAGCGCCCATCCTATAGACGGTTTCAAATGCGATATATGCGGCAAGTCGTTCAAAGCTTGGCTGTACTTGGACGGTCACAAGAAAGGTGTCCACGAAAAGGATCCCGAGCACACGTGCGATATCTGCGGAAAATGCTTTACGAACAAAAGTTGGCTTGGCTCACACAGGGCCAAACATATGAAGGATTTCAAGTTTAAATGCGAAAAATGCAATAGGGGATTTGTGCGAAGGTGCGACCTCAAATATCACCTGATCACACACGACACGGACCCTTACTTTACGTGCGAGAAATGTGATAAGAGCTTCAAGAATCACGCTTACTTCAAAATACACGTCGCAAAGCACGATCCGAGTTACGTGCGAAAGGAATTCGTTTGCGAGTTGTGCTCGAAAGTTTTCCAAACCAAGAAGTCCCTAGTCAAGCATACTAAGTCACACGAGGGAATATTGCCTACTAGTTTCATGTGCGAGATTTGCGGAAAAACCGTCATGAGCCTTGCGTCCTTGGTGGTGCATAAAAGGACTCATACGGGCGAGAAACCGTTTGTTTGCAATACTTGTGGTAAGGGTTTTATCAGCGCTAATCTACTCAAAACACACTTGCTAGTTCATACAAAACAGAAACCGCACGAGTGTGAGATTTGCAGGAAAAGCTTCTCGCAAAGATCCACACTGAAGATACATTTACGCTACCATACCGGAGAGAGGCCCTATAAgtttgTACCAGTGCAGATGAAAGTTGAAATGGAGGAGGGTCCCTACGCTGTAACATCGATGCATTTTGCACAAGCAGATTTGCAActccacaataaaaaaattaatcgaaaTAGTGCGGTGTTTACTTGCGAAGAATGCGGAAGAATTTTTAAGACCAGGCAAAACTATAAGGACCACAAGAAAGCAATACACCAATTGAGCCAAGACCACAAATGCGAATTTTGCGGCAAGTTCTACGTCGGTCGCCGGAATTTGGCCATACACAGGGCACAACACACGaaggaatataaatatatgtgcgACATATGCGAGTGCGGGTTTCTTTGGTCAAGAGATCTACAGATTCATCAGAGCATGCGCCATAGTATGCCTCAGATTTATTGTGATACATGCGGAAAAGCTTTCGCGCTCAAAAAATACCTTAAGAGGCACGCGAGGATTCACGATCCTAACAGGAAGCAATTTATACCGGCACAGATGAAggtcgatgatatagaagagggtcctTATGCCGTAACATTATTACAAGTAACACAGGAAAATTTGAGGCGGCGTGATAAGACGGCCAGTCAGAATAGTGCAAGGCACGTTTGCGAAGAATGCGGAAAGGTTTTTAAGAAAAGGCAAAATTATCACGGTCACAAGGCAGCCCTACACCAAATGAGCAAAGATTACAGATGCGAATTTTGCGACAAGTTCTTCGTCAGTCGTTCATATTTGGCCGTACACAGGAAGCAACACACGAACGAATTCAAAAATATGCCTCAGTTTCCTTGCGATAAATGCGGGAAAACTTTCAAGCTCAAAGATTATCTCACGAACCACATGAAAACGCACGATTCTAATAGGAAGGAATACGTGTGCGAGGTATGCTCGACCGTGTTCCATTTCAAGAATTCTTATATGCGACACGCGCGTCTTCACGAAGGTACGGCACGGCATATCTGCGAGGTATGCGGCAAGACGATGGCCACACCTGATACCCTCGCTGTTCATAAGCGGACGCATACTGGAGAGAGGCCGTTCGTATGCCACACTTGCGGGAGGGCTTTTATCAGGAAAACAATGCTCCTGATACATATTCGGACACATACCAAAGAGAAGCCTCACAAATGTAGGTTTTGCGATAAGGGATTCTCGCAAACTCAAAGCCTAAAGTTGCATTTGCGTTTGCACACTGGTGAAAAGCCTTACCAGTGCTCGTTTTgtgaaaatagttttataagCAAGGCAGCATTACTGCGTCATTGTAAAGCACATTAA
- Protein Sequence
- PPLENHCNNGDECPYCLKVHSWKIKKRCEICSKFFTSEETLAQHKRSAHPIDGFKCDICGKSFKAWLYLDGHKKGVHEKDPEHTCDICGKCFTNKSWLGSHRAKHMKDFKFKCEKCNRGFVRRCDLKYHLITHDTDPYFTCEKCDKSFKNHAYFKIHVAKHDPSYVRKEFVCELCSKVFQTKKSLVKHTKSHEGILPTSFMCEICGKTVMSLASLVVHKRTHTGEKPFVCNTCGKGFISANLLKTHLLVHTKQKPHECEICRKSFSQRSTLKIHLRYHTGERPYKFVPVQMKVEMEEGPYAVTSMHFAQADLQLHNKKINRNSAVFTCEECGRIFKTRQNYKDHKKAIHQLSQDHKCEFCGKFYVGRRNLAIHRAQHTKEYKYMCDICECGFLWSRDLQIHQSMRHSMPQIYCDTCGKAFALKKYLKRHARIHDPNRKQFIPAQMKVDDIEEGPYAVTLLQVTQENLRRRDKTASQNSARHVCEECGKVFKKRQNYHGHKAALHQMSKDYRCEFCDKFFVSRSYLAVHRKQHTNEFKNMPQFPCDKCGKTFKLKDYLTNHMKTHDSNRKEYVCEVCSTVFHFKNSYMRHARLHEGTARHICEVCGKTMATPDTLAVHKRTHTGERPFVCHTCGRAFIRKTMLLIHIRTHTKEKPHKCRFCDKGFSQTQSLKLHLRLHTGEKPYQCSFCENSFISKAALLRHCKAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -