Oere011288.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- prdm10
- Assembly
- GCA_031763485.1
- Location
- JARFOC010000983.1:151424-160800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.009 2.3 11.1 0.2 2 23 41 62 40 62 0.96 2 29 0.0018 0.46 13.3 0.7 1 20 69 88 69 90 0.93 3 29 5.6e-05 0.014 18.0 0.9 1 23 97 120 97 120 0.97 4 29 0.0095 2.4 11.0 0.5 3 23 133 154 132 154 0.96 5 29 0.00034 0.086 15.6 0.1 2 23 162 184 161 184 0.94 6 29 0.0096 2.4 11.0 0.5 1 23 190 213 190 213 0.94 7 29 9.9e-05 0.025 17.3 0.2 2 23 222 244 221 244 0.95 8 29 0.027 6.9 9.6 3.5 1 23 250 273 250 273 0.90 9 29 6.9e-06 0.0017 20.9 0.7 1 23 278 300 278 300 0.98 10 29 3.5e-05 0.0087 18.7 0.1 1 23 308 330 308 330 0.98 11 29 2.3e-05 0.0057 19.3 2.7 1 23 337 359 337 359 0.98 12 29 3.2e-06 0.0008 22.0 0.7 1 23 365 387 365 387 0.98 13 29 4.7e-07 0.00012 24.6 3.8 1 23 393 415 393 415 0.99 14 29 0.0027 0.68 12.8 0.2 1 17 421 437 421 438 0.93 15 29 0.0016 0.4 13.5 3.3 2 23 439 461 438 461 0.96 16 29 6e-05 0.015 17.9 0.9 1 21 468 488 468 489 0.94 17 29 0.028 7.1 9.5 0.2 1 23 500 523 500 523 0.91 18 29 0.0037 0.94 12.3 0.7 2 23 533 555 532 555 0.96 19 29 0.00033 0.084 15.6 3.4 1 23 561 584 561 584 0.96 20 29 0.77 1.9e+02 5.0 7.9 1 23 589 611 589 611 0.97 21 29 0.0015 0.38 13.5 0.2 1 23 619 641 619 641 0.97 22 29 0.00012 0.031 17.0 0.2 2 23 649 670 649 670 0.97 23 29 0.0012 0.3 13.9 0.2 1 23 676 698 676 698 0.98 24 29 3.7e-06 0.00093 21.8 5.6 1 23 704 726 704 726 0.98 25 29 7.9 2e+03 1.8 0.8 2 14 951 963 951 964 0.87 26 29 0.015 3.8 10.4 0.7 1 23 999 1022 999 1022 0.91 27 29 0.046 12 8.9 4.5 1 23 1040 1063 1040 1063 0.95 28 29 0.00016 0.042 16.6 7.9 1 23 1068 1090 1068 1090 0.98 29 29 0.00011 0.028 17.1 0.8 1 23 1099 1122 1099 1122 0.98
Sequence Information
- Coding Sequence
- ATGATCACTGCTGAAAGGGTCTTGGACACCTATAAAGTCGAGCTAGTTGTCGTAAAGTATTGTATGAGGTTCAACAAAGAAGAAGTTCAAAAACCATCAATGACTCCCAGGGCAAGCGTACAATGTCCGATTTGCGCAGCTACTTTCAAAGAAAGCAACTTGTATCAACACCGACGAAGCGTCCACGGAAACACTTTCTGTTCTTTCTCTTGCGGTAACTGCGGCAAATATTTCCGTAAAGAGTTGAATTTAGAAAAACACAAACTGTCGCCTTGCAAAGCCAAAGGCTTTCGATGCCAGCAGTGTTCCGAAACCTTTTCTACTCTCAGTTACTTGCGCATACACGAAAAAATTGTTCACAAAGGCGTTGCGAGCAAACTATCCATGTTGGTCGCGTGCGATTTGTGCTCGAAAGAATTCGTGACACGACGCACGATGCTTCAGCACCAGTTGAGAGTGCATAAGAAGGAATTGAAGCCGATATATTGCGAAATCTGTGGTAAGCCTTATAGTAGCCAGGAAGAGGTTGAAAAACACAAGACACGTTGGCATGCGCGGAATGTTGTTTACAACTGTGATGTTTGTGATAGGAGCTTTAGGTGGCTGTCGCGATTGGCGAAGCATAAAAAAGAAGTACACGAATCAATCGATGATTTTGCTCTTGTGTGCCGTATATGCGACAGGCGCTTTCGATCTGAAGGCAATTTTAATGCACACTTAAGTGTTATGCACACAGAGAGACCTATACACAAATGTGATAAGTGTGATAAATCTTTTAAGGCCGTTTGTCTTCTGAAAGAGCACGAAGACGTCTATCACCAAGGATTACGTTTTGTTTGCGCAACTTGCGATAAAGTTTTCAGGAGTAGTAGTGGTTATAAGAGCCACCTCTTAACACACAAACCGGGTTACGTCAAGGACTATATCTGCTCCATATGTTCGAAAGTTCTAGCAAATCCTTTATCCCTCCAACGACACATGAAAGTCCACAATGGTATTAGAGATTGCTACGTATGCGAAGTGTGTGGTAAAGCCTATACTGACAGCCAAACCTTTACCCATCACAAGCGCaaacatactggagaaaggccGTTCGTTTGTGATGTATGTGGCAAGGATTTTGCCGTAAAGCAGCATCTTAAACAGCACATTTTGACGCACACCAAAGAGAAACCCTACAAATGTGATGTCTGCGGAAAATGTTTCTCGCAAAGGACCAGCCTTAGGATCCACCTGCGATACCATAGCGGAGAAAGACCTTATGAGTGCGATATTTGCCAGAAAAGATTTACTTCCAAAGGCCTGCTAAATCTGCAGTGTTGTATCTGTTCGAAACCGTTCGAAAGTAAACGCTATCTGCGCGAACACGAACGCAAGACGCACGCAAAGCTCGTCTGCCCGTTTTCGTGCGACAAGTGTGGAAAACGTTTCCGGAAGGTGGCGAACCTATCCAAGCACCAGACGTCCCCTTGTGTTATCGAACACCCGGGTGTTAGTTACGAGTGCGAGCTGTGCGAGAAGAGGTTCGGATCGACGACCCGACTGGAAATTCACAAGGAAGAGGCACATCAGTGGTCCTCTATAGTAGAGGGAGTGCGGTGTCCGTTATGCGATAAGCGTTTGCTTTCGCGAAAAAATTTGAGTAAACATATGAAGCTTATACACTTCAAAGAACCAAAGCACAAATGCGGTGAGTGCGGAAAGATATTCCGTTGCCCCTCTCATTTAAGGGAACACCAACTGGTTGCTCACGGTGGTCAACGTTACACCTGCGACGTTTGCAAGAAATCTTTTAGATGTAAGAGCCGTCATAAGGATCACATTCGAACGCATCAACCCGATCACGTTACGAAATTTCCGTGTTCCATCTGTTCCAAAATCCTTACGACAAGCACTGGGTTGGAACAACACACCAGTATTCACACTGGTGCCAGAGAGGTACGCGTGTGCGACGTTTGTGGCAAGGTTTACGCCACGAGCAAATCTTTAGCGTATCACAAACGCcaacatactggagaaaagccttACGTCTGTGACACATGCGGGAAAGGATTCTTGAGGAAACAGTATTTAGGTGATCACATCCTGACACATACCAAAGAGAAGCCGCATAAGTGTGAAGTTTGCGGGAAATGTTTCTCGCAGAGGACGAGCCTGAGAATTCATTTGCGTTAccatactggagagaaacctTACGAGTGCGAGATTTATAGGCAATTGTTCAGCGATTCACAGCATGGATGTAACAAGAAAAAATCCATAGTTACTGCTATAATGGAATGGATGGATTCAGTAGTTGATGCTCTGGATAATAAAGATCTGGTAGAACTGATATTCTGTGAcctgtcaaaggcttttgattgTGTCGACCAGGAGTTTCTGCTGTCTAAGCTGGAATTCTACGGAGTCAGAGGAATACCACTCCAGTTAATAAGAAGGTATCTAAGTAGCAGGACACACCAGAAAAGTGGCTGGGAAAGACATTGCTCGGCAGGCATACTTTGGGGTGTTCCACGCGAGGGCGACCTACGGTATTATCCTGTAGGAGGGGTCAGTGGCATCGAGGAGGATATTCTTGCAACAAGAACAAGTCATAGGAGCAATACTGGGCGTTACGTCGATGATCTAAAAATTTGCAATAGAATCAACAGCCCTGATGATAGCGAACAGTTCCAAACAAATCTACAAATGATAGAAAATTGGAATATCCAAGGGAATACCCAGGATAAGATTTCTTTAAACCTCAAGAAGTGCTCCGGAGTAACATTTACCAAAATAGTCAATCCgTTTGTAAAATTGGAACTCGATGATTTTGAGTGGCCGGACGTTAACGATTCTGGTGCGAATCGACAGTGCACTATCTGTTCCAAACTGTTCGAGAGCCAACACTGTCCGTATTCCTGCGACAAGTGCGTGGAACATTGTGTCTGCAAGGAGTGGAAAGCAGAGGAAAACCAGATCTCCGCCTGTGATGTCGAACACTCAGATGTTAGTTATAAATGTGAGATCTGCGGGAAGAACTTAGGGTCGACGACGTGTTTAAAAATTCACAAGGAAGCGGCGCATCAGTTGTCCTCTGAAGTACAGAATGTTCCTGGTCAGTTATGTGAAAAATTATACGAATGTGATAAGTGCTGCAAGGTATATACTCGTAATGGTTGTTTAAAAGAACACCAATTTATTGTTCACAACGGTCAACGTTATATTTGCGATGTTTGCAAAAAGTGTTACAGAAATAAGACGTATTACAAGCATCATATACGAACACATCAATCCCGTTACCTTGAGGTAAACTACACGTGTTCCTTTTGTTCGAAAGATTTTCCGACACCATTGGGGCTGAAGCAACACATAAGGAGGACCCACGCTGGGAAATCGAAGGGAAAACAGGTTTTGAAATTCGTAATCAAGAAGTATAGCGGTCCTCTATGA
- Protein Sequence
- MITAERVLDTYKVELVVVKYCMRFNKEEVQKPSMTPRASVQCPICAATFKESNLYQHRRSVHGNTFCSFSCGNCGKYFRKELNLEKHKLSPCKAKGFRCQQCSETFSTLSYLRIHEKIVHKGVASKLSMLVACDLCSKEFVTRRTMLQHQLRVHKKELKPIYCEICGKPYSSQEEVEKHKTRWHARNVVYNCDVCDRSFRWLSRLAKHKKEVHESIDDFALVCRICDRRFRSEGNFNAHLSVMHTERPIHKCDKCDKSFKAVCLLKEHEDVYHQGLRFVCATCDKVFRSSSGYKSHLLTHKPGYVKDYICSICSKVLANPLSLQRHMKVHNGIRDCYVCEVCGKAYTDSQTFTHHKRKHTGERPFVCDVCGKDFAVKQHLKQHILTHTKEKPYKCDVCGKCFSQRTSLRIHLRYHSGERPYECDICQKRFTSKGLLNLQCCICSKPFESKRYLREHERKTHAKLVCPFSCDKCGKRFRKVANLSKHQTSPCVIEHPGVSYECELCEKRFGSTTRLEIHKEEAHQWSSIVEGVRCPLCDKRLLSRKNLSKHMKLIHFKEPKHKCGECGKIFRCPSHLREHQLVAHGGQRYTCDVCKKSFRCKSRHKDHIRTHQPDHVTKFPCSICSKILTTSTGLEQHTSIHTGAREVRVCDVCGKVYATSKSLAYHKRQHTGEKPYVCDTCGKGFLRKQYLGDHILTHTKEKPHKCEVCGKCFSQRTSLRIHLRYHTGEKPYECEIYRQLFSDSQHGCNKKKSIVTAIMEWMDSVVDALDNKDLVELIFCDLSKAFDCVDQEFLLSKLEFYGVRGIPLQLIRRYLSSRTHQKSGWERHCSAGILWGVPREGDLRYYPVGGVSGIEEDILATRTSHRSNTGRYVDDLKICNRINSPDDSEQFQTNLQMIENWNIQGNTQDKISLNLKKCSGVTFTKIVNPFVKLELDDFEWPDVNDSGANRQCTICSKLFESQHCPYSCDKCVEHCVCKEWKAEENQISACDVEHSDVSYKCEICGKNLGSTTCLKIHKEAAHQLSSEVQNVPGQLCEKLYECDKCCKVYTRNGCLKEHQFIVHNGQRYICDVCKKCYRNKTYYKHHIRTHQSRYLEVNYTCSFCSKDFPTPLGLKQHIRRTHAGKSKGKQVLKFVIKKYSGPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -