Olig009588.1
Basic Information
- Insect
- Osmia lignaria
- Gene Symbol
- -
- Assembly
- GCA_012274295.1
- Location
- NW:543401-554860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.13 8.9 6.2 1.1 1 23 657 679 657 679 0.97 2 10 0.00027 0.019 14.6 0.0 2 23 776 797 775 797 0.95 3 10 0.032 2.3 8.1 0.3 3 23 1028 1048 1027 1048 0.97 4 10 0.0053 0.37 10.5 0.1 1 19 1125 1143 1125 1146 0.94 5 10 1.2 80 3.2 2.4 3 23 1168 1189 1166 1189 0.95 6 10 3.6 2.5e+02 1.6 0.0 1 23 1209 1231 1209 1231 0.95 7 10 0.35 25 4.8 1.4 1 12 1238 1249 1238 1261 0.88 8 10 0.026 1.8 8.4 1.2 1 23 1281 1303 1281 1303 0.95 9 10 0.88 61 3.6 0.1 3 23 1865 1888 1863 1888 0.81 10 10 0.017 1.2 8.9 1.0 1 23 1890 1912 1890 1912 0.97
Sequence Information
- Coding Sequence
- ATGGAGAATCTTAACAATGAAATTCGTAACCTAATTTCATCTTCTGGACATTCTTGTTCCAAGGCAGTACTTGAAATGGTATCCCAGCAGAAACAACAATCTGATGTTTCTACAAATTCCCGTTTGTATACCTTAAGAACCAGATTTAACAGCTTTAATATGGGAAAACTATCAAAAACCAACAATGTAAGAGCTATGCATGAACTACTGTGTAAACCAGTTTCtgtaaagataaaaaaattaccaGAGTTGGAATTAAACAAAACATCTAAaataaggcataaaatacagaaaaacaaaataaagcaaattaataaaatgacaaAAGGAAAAGCAAAATTTAAGCAAAATCAGGTTGTAAGTCAGCTGCATGGAAATAAGAATGTTCAACCCCAACCTGTGTCAGCTTGTGAAACAGTAACATCTAATAATCATAATTCAAGCTCAGAGGATTTATTAAACAGTATTAAACAGccatatataaaattacatagaaTCGatgaagtaattaataaaatagcaCAGACATTTGCAAAAGTAATTCcaaataaagaatataatacAAATGTACATGAAGGTCATATAAAAAAAACTCAAactgaaataaatggaaaaccATCAAACATTGATATAGATGAATGTCTTGAAAAGAATAACTCTGAAACTACAACATCTAATCCAGATTTAGATGATACTTTGCAACCAAATCATAATGACACATCTGATTCTGAGactgatattaataaaaatgctaGTAATAGAACTTTTAGAagaaaacgtaaaattttctgtgacgacgacgacgatgatgatgaGAGTGATAATGTATATAAAGTATCTTCAGGAAATACAAAAAcattaaagttaaatatatcagagaaagaaacaaaagattGTGTAGCTAATAAAGAAGTTAATGCTGTTAACATCAGGCCAGTATCGGTAACAAAACCACTTCAAAAGTTAAATGTTTCTGATAAATTACATAATCCttcaaatgaacaaaattcTCGTTGTggtaatgtaaataaaatgcaaCAACAGGATAATGTTTCCACTTTTGTGCCTTCAAATGTTATACGGAGTACAGAAAGAAATGTGtttcaaacattaaataatgaaGACATTCAAAACCAAATTgaagaatcatttatttcagataaagatttaaaagcaaaatataaCTTGTTTAAAGATTTAAGAGTTTGTTTGGTCAAGTTTGATGATATAAAATGCTCTACAGTTAATAAATACTTAGATTTAGAAGATGAATTgctaataagaaaatatatgaatgaaTTAAACAATTCTGGGTGTGCAAATGTACAACGGTTCTTACTTGATAATGAGATGgaatttgaagaagaaaatgaaaaaatagatATTGTTGAATTTATGAAAGATGCACCGATCTTAAACTCAAACGTTTCTGAAGTTTTAGAGAATACAAGAATAAAACAGGAGTCAGATTTAAATAATCAGGAAATTTCTGAAGAAGTATCTTCAGTATATTCTGCTGAATCTACACCATCTTCTCCAATAAAATCAGTCGCTAAAGCTTCTAAATCGTCAGgtgtaatagaaaatatcattAAGGCAGGGCAATCAGGAGATAGATTACATAGTCCTATGGTTAGTGAGGTATATTTTCCGAATAAAGAATTATCAATAACATCGATACGTCAATGTAGTCCTAAGAAGACAAGTAATAGTGTGAAAATAATGGATTCAGAAAGTGTACAGACTAATGCATATAACATCACCTTTTCCAAAAAAcctgaaaataatgaaaaagtacTTATCTCTGGAAGAAAGATGTTTGTAACCAAAATACATGCTCAAACtgtaaatatcataaatcctAAAGTAAATacgaaaaagaatatttcagcTTGTCATTCCACAATTGTTAGTCCATATAAGCTTAGAAAACCTGTGGATAAAGAAGATAATAACCATGGTATTAGTTATAAATGTATTGTCTGTGATTGTGTCTTTGAAAGTTATTCTATTTTGCAAAATCATTTGATTAAACACAGACAAAAGCAAAATAATATTCCATCAAATACACCAGAAGAATCTATTTCAGTTCATTCTGAAAATTCTGAGAATCTTCAAAAAACAGTACCTTGTActtcagaatttaaaaagacaGAATCACTACAGCTTTGTGAGCAAAGTACTTCGCAAACAACGTCATCAAGTAACGCTCATGAAAGGAATAAACCACAAACTAAAGGTACTTCAACGCAAGatttacaaaagaagaaaaattatttttcaaaacaacGATCTAAGTTTATCGATACGCTTTGGAAACCAAGCGAATGTACTatttgttcaaaaatttttccaacagCAACTGATTTAGCAGCTCATATTTTCTTGCACACAGAACATGAATTGCAAAAAGCTTATGAAACTGCCAAACAAAAAAACAGCAACAAagatgaagaaacaaaaagtgAGAAATCTAAACAGACTACAAAACAGTCAGATAATGACAAGAAGATAATGCTCACAACTGAAAAACCTTCAGAGGCTGTtaataaacaagaaaaattaccAGTTGTACAGCAATCTAGTGGATCATTAAGAACAATTGTATCGATAGTAACAACATCAACGACAGCAACAACATCAACAATAGCAACAACATCAACGACAGCAACGACATCAACAATAGCAACAATAGCAACAACATCAACGACAGCAACAATAGCAACAACATCAAcgacagcaacaacaacagtaCCATCAAGTACAACGATAACTGTTACTGATACTTTGAACATAAATAAGTCACCCGTTGCAAGCGGAAATAGTTCTAAAGAATTACAATTGCCTTcgattaaaagtaaattaaaaaagaggaaagaaaagaaatcctttaaaatatgtaattgcCATAAAGAGacagaaattaataacaattgttTGAAGATTGAAATAGTTCTACTTTGTCACACTTGTAATGTACTATTTAGAAGCATGAACTGTTTTGACAACCATTATGATCTTCCTGAATATGAATTGTGTCGTGCAGATCGTGCTCATAGCAGTAGAACTCCAAATTTATTGTGTGTCACATGTAGTAAAATGTTTCCGTCAGTTCAAGATGTACGTCGTCACTTAGAGAGTCATGCCCGAGTTAAGCGAAATTTTACAATGGATTTTCgatgtaaaatttgtaaagtTCTATTTATTGGAATTGGAGCTCTTTTTTATGTTCATTGGTCAAAACATCTGCAAGATCCTTATTGGAAAGCTGATGAAACAACATTTCCAAAAAATTCAGTGGTACATTCACAACCAAACCAGGATGGAGACACTTCAAATACATCTAAAGAGAATTTCATTCAAGTAGCAGAATACATTTGcaataaatgcaaaataccTTTTGTCACTGAAACTGACttgaaaatacataatttaaaatgtgTGACATCTAATAATAGCTGTAATAGTAATGCAGAGAGATCTTTAGAAATAGAAGTACATTGTAGTTTATGCAATGATGTTTTCactgaaaaattaacattttatagaCACGTGAGAAACAAACATAATTTTATCAGCGAACCTCAATCCGTTTGCGTATCTCTCACCTTAATCAAAACGGCATATATTTGTAATGTTTGCATGGAAGTATCTGAAAGCATGGAGGATTTTGAGGATCACTGGTTAAAACATAGCACAGCTACTGTCTACTTTACTTGTACATATTGTACAAAATCATATTGCAATGGTTTGAATGCTTTCTTAGAACATGCTAGGATGCATCAAGTTAATGTGAAACAATATGTACTGTCTTGTAAAGTAGATTATGAAAATACTGAATTCATTTGTAAACACTGTAATATTGGGTTTCAGTCTGAGAAAGACTTTAATGAAcataatattattcataaactaAATCAAGTACAGAATTATAAAGATGATCAAGTACAGAATCAGAAAGATTCTGTATTACATCCGAAGAAGAACCAGATTTCTGATCTTTCGACGATAACAGAATTAGTTGgtgaaaaacaaaaggaagatAATACAAGTCAATTAACAGAACAGAGAAATGAAGTTCATCCAGTATCAACTGATAAAGATGAGGATaggcaaaaattaattaatatattagaaGGAACGGATGATGATTCTGAACCTGAGTTAACGATAGATTGGATAGAGATaccaaaagaagaagataaattatcagaaaaaggaagagataaagaaaaacaaactGCATTggataatgaattaaatacaTCTTCCATTGTACAACGTCCTACAGTTTTAAAAAGTAGTACAGTTAACACATCTATAAAAGATGTAGTGCAAACACCTTCACAAGCATcttctaaaaatattgttcCAACATATTCCCAAACTAATACTGAAAATccaaaaagaaatgttttgaaaattccagtGGTAACAATAGAAGACAAgtctgaaatttcaaaacagCCAGAATGTTTAAACGTGCAAAGTaccgaaaataaaaatgcttttGATTCAACTAAAAGTCAAGAAGAGCCTGTagcattaaagaaaaatagtcCTCCGAGACCAAGACAAGGATTCTTAAGAGTAAGATCTCTTGCAGAACTTACAAATCAGACAAAATCTGTACAAGCTGAACAGAGTAAAAGTCCAGAACCGTCTAACTTTATCGTTCTTCACAATCCTTTAATCTTCGCAAAATGTGTTACACCTGCTACTACATCAGTAATAACCAACCAACAATCGAAGCAAACACAAACGCATGCAAATCAAGACAAAAGTTTAGGTGATGTTATGCAAAATTCAACATCAGCGTATCATAAAAATTTACCTGCTTCCAACATTACTCGAACAGCCTTAGGTACATCACCTTTTGTTCAGAAAAGTGTAGACGCTTTTACTACAGCAGCAGCAGGTTGTTCAAAAGCACAAAACCAACAAGTAAGAGATGCAACGCCTCGTTTTACGAGTATACCTTCATGTATAAATATCCCAAATAATACACGAGGTATAAATCCACTTACTTGGTATCTTCCATCTCCACAAATAATCGCAGCATCAAAGAATACTTTTATTCACAATGGACAACGTGTAGTTGCAGAAAAAAGATGTAACGATGATAATTTGATGACAACAGGCCAAGCTACTACAATTAACAACAATCAGAATTCTAAAGAGTATCAAACTACTTCACCAATTATTTCTTATCAATATCCATGCTTTGTTGCCACTAATTCAAATAATGGTAATGAAATGCAGCAAAAAAGTCAACAGATGGGGATTAATCCTTTAGGTGAGGCTCCTagcttttattataaaaatcctGTTAGTAGTACTGGTGGGATGTCGATAGTGATTAATCAGACTACAGCTGCTGTGCAAAATGTGCCCACAATAAATGTTTTGCGACAGGAACAGCAACATGGGGAAGGCACAACAATTTTGGACCATTCGTATGCACAACAAACACAGGATCTAAGTAATTTTTCGGCATCAAATAATGTTTATCAAATGGTAAATGAACAAGAAATACCAAACGTAGAAACTAGTGCTTCTTATAAAGTTAATCTACAACCACAAATACTGATTTGTGTTTATTGTCCAAaaactgtttatttttcatctattGAACTGCTTGAATTACATATGAATATGAATCACAATTTCGTATGTAATACTTGTGGTCTACGTTTGTACAGTTTTGATAAACTAAACATTCATAAATTGAAgcacaattttatttga
- Protein Sequence
- MENLNNEIRNLISSSGHSCSKAVLEMVSQQKQQSDVSTNSRLYTLRTRFNSFNMGKLSKTNNVRAMHELLCKPVSVKIKKLPELELNKTSKIRHKIQKNKIKQINKMTKGKAKFKQNQVVSQLHGNKNVQPQPVSACETVTSNNHNSSSEDLLNSIKQPYIKLHRIDEVINKIAQTFAKVIPNKEYNTNVHEGHIKKTQTEINGKPSNIDIDECLEKNNSETTTSNPDLDDTLQPNHNDTSDSETDINKNASNRTFRRKRKIFCDDDDDDDESDNVYKVSSGNTKTLKLNISEKETKDCVANKEVNAVNIRPVSVTKPLQKLNVSDKLHNPSNEQNSRCGNVNKMQQQDNVSTFVPSNVIRSTERNVFQTLNNEDIQNQIEESFISDKDLKAKYNLFKDLRVCLVKFDDIKCSTVNKYLDLEDELLIRKYMNELNNSGCANVQRFLLDNEMEFEEENEKIDIVEFMKDAPILNSNVSEVLENTRIKQESDLNNQEISEEVSSVYSAESTPSSPIKSVAKASKSSGVIENIIKAGQSGDRLHSPMVSEVYFPNKELSITSIRQCSPKKTSNSVKIMDSESVQTNAYNITFSKKPENNEKVLISGRKMFVTKIHAQTVNIINPKVNTKKNISACHSTIVSPYKLRKPVDKEDNNHGISYKCIVCDCVFESYSILQNHLIKHRQKQNNIPSNTPEESISVHSENSENLQKTVPCTSEFKKTESLQLCEQSTSQTTSSSNAHERNKPQTKGTSTQDLQKKKNYFSKQRSKFIDTLWKPSECTICSKIFPTATDLAAHIFLHTEHELQKAYETAKQKNSNKDEETKSEKSKQTTKQSDNDKKIMLTTEKPSEAVNKQEKLPVVQQSSGSLRTIVSIVTTSTTATTSTIATTSTTATTSTIATIATTSTTATIATTSTTATTTVPSSTTITVTDTLNINKSPVASGNSSKELQLPSIKSKLKKRKEKKSFKICNCHKETEINNNCLKIEIVLLCHTCNVLFRSMNCFDNHYDLPEYELCRADRAHSSRTPNLLCVTCSKMFPSVQDVRRHLESHARVKRNFTMDFRCKICKVLFIGIGALFYVHWSKHLQDPYWKADETTFPKNSVVHSQPNQDGDTSNTSKENFIQVAEYICNKCKIPFVTETDLKIHNLKCVTSNNSCNSNAERSLEIEVHCSLCNDVFTEKLTFYRHVRNKHNFISEPQSVCVSLTLIKTAYICNVCMEVSESMEDFEDHWLKHSTATVYFTCTYCTKSYCNGLNAFLEHARMHQVNVKQYVLSCKVDYENTEFICKHCNIGFQSEKDFNEHNIIHKLNQVQNYKDDQVQNQKDSVLHPKKNQISDLSTITELVGEKQKEDNTSQLTEQRNEVHPVSTDKDEDRQKLINILEGTDDDSEPELTIDWIEIPKEEDKLSEKGRDKEKQTALDNELNTSSIVQRPTVLKSSTVNTSIKDVVQTPSQASSKNIVPTYSQTNTENPKRNVLKIPVVTIEDKSEISKQPECLNVQSTENKNAFDSTKSQEEPVALKKNSPPRPRQGFLRVRSLAELTNQTKSVQAEQSKSPEPSNFIVLHNPLIFAKCVTPATTSVITNQQSKQTQTHANQDKSLGDVMQNSTSAYHKNLPASNITRTALGTSPFVQKSVDAFTTAAAGCSKAQNQQVRDATPRFTSIPSCINIPNNTRGINPLTWYLPSPQIIAASKNTFIHNGQRVVAEKRCNDDNLMTTGQATTINNNQNSKEYQTTSPIISYQYPCFVATNSNNGNEMQQKSQQMGINPLGEAPSFYYKNPVSSTGGMSIVINQTTAAVQNVPTINVLRQEQQHGEGTTILDHSYAQQTQDLSNFSASNNVYQMVNEQEIPNVETSASYKVNLQPQILICVYCPKTVYFSSIELLELHMNMNHNFVCNTCGLRLYSFDKLNIHKLKHNFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -