Basic Information

Insect: Osmia lignaria
Gene Symbol: -
Assembly: GCA_012274295.1
Location: NW:1946328-1950899[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.004 0.28 10.9 3.5 1 23 170 193 170 193 0.97

2 10 0.15 10 6.0 1.4 1 23 216 239 216 239 0.95

3 10 0.051 3.6 7.4 0.1 2 19 306 325 305 327 0.93

4 10 0.058 4.1 7.3 0.7 1 23 369 392 369 392 0.96

5 10 8.1e-08 5.7e-06 25.7 2.4 1 23 398 420 398 420 0.97

6 10 2.3e-05 0.0016 18.0 1.9 2 23 436 458 435 458 0.95

7 10 1.9e-05 0.0013 18.2 0.7 1 23 464 486 464 486 0.98

8 10 0.0043 0.3 10.8 2.0 1 23 492 514 492 514 0.97

9 10 0.00021 0.015 14.9 3.3 1 23 520 543 520 543 0.98

10 10 0.0033 0.23 11.2 0.5 1 23 550 572 550 572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.004	0.28	10.9	3.5	1	23	170	193	170	193	0.97
2	10	0.15	10	6.0	1.4	1	23	216	239	216	239	0.95
3	10	0.051	3.6	7.4	0.1	2	19	306	325	305	327	0.93
4	10	0.058	4.1	7.3	0.7	1	23	369	392	369	392	0.96
5	10	8.1e-08	5.7e-06	25.7	2.4	1	23	398	420	398	420	0.97
6	10	2.3e-05	0.0016	18.0	1.9	2	23	436	458	435	458	0.95
7	10	1.9e-05	0.0013	18.2	0.7	1	23	464	486	464	486	0.98
8	10	0.0043	0.3	10.8	2.0	1	23	492	514	492	514	0.97
9	10	0.00021	0.015	14.9	3.3	1	23	520	543	520	543	0.98
10	10	0.0033	0.23	11.2	0.5	1	23	550	572	550	572	0.98

Sequence Information

Coding Sequence: ATGAATGAAGAAACAAGCGTTGAAGATTCTTCGTATTTAAGTTATGAGATAAATGGTACTAGATATATTTTGCAAACAGTATCAGATCCAGCTGTTGATATAGTGAAAACCGCATCAACTGATCAAGAACAAACCGCCGCAATTAACATTATAGATGATACacagatagaaaaagaagaagaggaagaagaagaagaagaagaggaagaatcAATTTCTTTAGTTTGCTTAGATGGTCAAGTCTATGCATTTCAAAATGGTGAATTACAAGAATTAGACTTCAGTCAGGTTACAGAACAAAATGAACTGCAAGAAAAAGCAGTTTTATTGTCTAAAGATAATGACAATTGTGAAACGCAGTATATCACTAACGAAGATTTAATAATTGGTAACATCGATGAACATTCTCAAGAACAATACGAAGTTATTAcaggagaaaatgaaaagaattttgtcGTAGAAAAGTCCAATGTAAATGCCAATGATTTTGTCGAAGTTGTGACGGCgttcaaatgtaaaatatgtacTTATACCACTCAGGACAAAACACAGTTACTGCAGCATTTTCAAAAAACGCATGTCAACCCAAAAGTAGATGTAGAAGTAAAGGAAGAAACCAAGAATACGGATGAAGTAAAATTGTTATACATGTGCGGAGAATGTTCCAATTGCTTCCCTTCTATAGAAGACTGCAAAGCACATatgataaatGATCATCAGTTGACGGATACAGGAGGTAATAAAGGttgcaaagaaaatataacGGATGATTCGAAAGATGCTGGTTTATTGGATGAAAGCATAAGAGAGAGCGTTGAGAACAATGATATAAAACGTCAAGTTAAGATCCAGAAACCTTTAAATTCTGAATATATGCTCAATAAAAAGATGATCGAATTGATGGAAAGGAATGTCAAGTGTTCGTATCGAGGATGCCCTTACAAATTCTCCACAGAGGAAACGATGCAACAGCATGCAGTTTGTCATACAGAATCACAAAATGGGACAGCATTTAAATGTACCGTTTGTCGTGATACTAAATTTACCAAATGGAGACAATGTAGTTTGCATCTTTGGAAGAAGCATCAGATCGACATAGGTCTGTTCACTTGCAAAATATGCAAAGCGTACAAAAGTGCAACGATGGTGAAACTTCTGACCCACATGCGAGTACACAGTGAAACTCGGGAATACGAATGTTCAGAATGTGGTAAATGCTTTAAACAAGCCAGTCAATTGCGTAATCACAGAGTCATGCATTTAGATCGTAAGACACTGGAAGTAACGCGTTGGTATACTTCCAAAAAATGTGATATGTGCGGAAAAACTTACGCCAATTCGAAGTGTTTAAAAAGTCATATTCAAGCGGTACATTCGAAACTGCGACCGTACGTTTGCAATGTTTGCGGGCATTCTAGTGCTCGAAAAGCTATGTTGCAAATGCATTTACGTCAACATACCGGCGATAAACCATTCAGTTGTGAACTTTGCGAATACAAAACCGGGGATCACAACACGTTGCGCCGTCACATCATGCAACATACAGGATTCAGACCTTATAAATGCCCGCATTGCTCGTACACTGCAATACAAAGTAGTAgctataaaaatcatttaaagtCCAGGCATCCTTTGTTATCTGGTTTATTTACATGCGATCTGTGTCCATTTAAGactgttaaaaatgaaagttacATACAGCACATAAGAGATCATGAAAAAGGATTGATTAAAGCAAATGTGCAGAAAAAAGATGGCGAGAACGTCGAAGTTTTTCCTGGTAATATCGCAGCGGCACAATTGATCTACAGTTGTTTAGGGGCTTTTTCAAAAGTAGGGGATACTTTAGAAGCAAACCTAATGTCTTCCTCAACGTCTGCAGATGGTACGTCGCAAACAATCACAATACAAATACCATCGAAACACCTTGAGGGTTCACTGCCAACGAGAGAAAGCGAATCTAAGAATGATTCGTCAACGATCGAGCAAGAAGACGAGGAAACGATGCATTGTTTTTTAAAGATTccaagagaagaagaagaaagtataGATACCGGTGGTATAACTATACCCGCGGAACCCGAGGAATCGGGTGTAACAACAATTAATGTTGatacgtga
Protein Sequence: MNEETSVEDSSYLSYEINGTRYILQTVSDPAVDIVKTASTDQEQTAAINIIDDTQIEKEEEEEEEEEEEESISLVCLDGQVYAFQNGELQELDFSQVTEQNELQEKAVLLSKDNDNCETQYITNEDLIIGNIDEHSQEQYEVITGENEKNFVVEKSNVNANDFVEVVTAFKCKICTYTTQDKTQLLQHFQKTHVNPKVDVEVKEETKNTDEVKLLYMCGECSNCFPSIEDCKAHMINDHQLTDTGGNKGCKENITDDSKDAGLLDESIRESVENNDIKRQVKIQKPLNSEYMLNKKMIELMERNVKCSYRGCPYKFSTEETMQQHAVCHTESQNGTAFKCTVCRDTKFTKWRQCSLHLWKKHQIDIGLFTCKICKAYKSATMVKLLTHMRVHSETREYECSECGKCFKQASQLRNHRVMHLDRKTLEVTRWYTSKKCDMCGKTYANSKCLKSHIQAVHSKLRPYVCNVCGHSSARKAMLQMHLRQHTGDKPFSCELCEYKTGDHNTLRRHIMQHTGFRPYKCPHCSYTAIQSSSYKNHLKSRHPLLSGLFTCDLCPFKTVKNESYIQHIRDHEKGLIKANVQKKDGENVEVFPGNIAAAQLIYSCLGAFSKVGDTLEANLMSSSTSADGTSQTITIQIPSKHLEGSLPTRESESKNDSSTIEQEDEETMHCFLKIPREEEESIDTGGITIPAEPEESGVTTINVDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118239;
90% Identity: iTF_00983190;
80% Identity: -