Basic Information

Insect: Osmia lignaria
Gene Symbol: salm
Assembly: GCA_012274295.1
Location: NW:1654408-1700043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3e-06 0.00021 20.8 0.9 1 23 387 409 387 409 0.98

2 9 5.9e-06 0.00041 19.8 2.1 1 23 415 437 415 437 0.98

3 9 0.037 2.6 7.9 3.8 2 23 815 836 814 836 0.98

4 9 2.6e-08 1.8e-06 27.3 0.6 1 23 842 864 842 864 0.97

5 9 3.6e-05 0.0025 17.4 2.6 1 23 874 896 874 896 0.98

6 9 0.0012 0.086 12.5 1.9 2 23 1198 1219 1197 1219 0.97

7 9 0.018 1.3 8.8 1.0 1 14 1225 1238 1225 1239 0.92

8 9 3.4e-07 2.4e-05 23.7 2.1 3 23 1421 1441 1419 1441 0.96

9 9 1.2e-07 8.2e-06 25.2 0.9 1 23 1447 1469 1447 1469 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3e-06	0.00021	20.8	0.9	1	23	387	409	387	409	0.98
2	9	5.9e-06	0.00041	19.8	2.1	1	23	415	437	415	437	0.98
3	9	0.037	2.6	7.9	3.8	2	23	815	836	814	836	0.98
4	9	2.6e-08	1.8e-06	27.3	0.6	1	23	842	864	842	864	0.97
5	9	3.6e-05	0.0025	17.4	2.6	1	23	874	896	874	896	0.98
6	9	0.0012	0.086	12.5	1.9	2	23	1198	1219	1197	1219	0.97
7	9	0.018	1.3	8.8	1.0	1	14	1225	1238	1225	1239	0.92
8	9	3.4e-07	2.4e-05	23.7	2.1	3	23	1421	1441	1419	1441	0.96
9	9	1.2e-07	8.2e-06	25.2	0.9	1	23	1447	1469	1447	1469	0.98

Sequence Information

Coding Sequence: ATGTCACGGAGAAAGCAAGCCCGACCAAGCCGTGCCCACCTCGAGGAGGATCTTGTCCAGCAGCCACCTCTGCTGCTCAATGCCGTGGGAAACTTGAACGAGACCCGAGAGGAAAATGACTTTACGTCGGATGGTGAAGAAAGTGCTGGCGGAGGGGGTGGAGGAGACGAAGCCGTGGATCTCACGGCATCCAGGTCACATCAGGGTGACGAGGACGACAAGGATCAAGATGATGCTCTGGAGGAGGATGAAGAGGAAGGTGTTGACGAGCAGGACGAGCAGGAAGACGACGAGGAAGGGTCACGGAAGCAGATGCGTCACAGACAGGATGCGGAGAACAACAACAACTTCGTGGAGGGTGGTACACCCGCTAGTCTGTTCCCACCTGCTGGAACTAGTCACGTCACCCTGGAAGCACTGCAGAACACGAAGGTGGCGGTCGCTCAGTTCGCAGCGACGGCTTTGGCCGGTGGCGCGGACAGCGAGGCGGCTCTGCAAGATCTGGCACTGTTGCAGAGCACCCTGTACACTCTTCAGCATCAGCAGGTGTTCCAATTGCAGTTGATCAGTCAGCTACAGCAACAACTGTCCATCACCCATAGTCAGTCGGCGCAGCCGCAAGGTACGCCCGAACCATCGGACAGTAAGGAAATATCTCCGTCTCCCTTGATCCAGCCTAAACCTCTGTCGAGTCTGACGTCACCTCCTTCGTCGCGTCCGCCGAGTCACCAAGAAACCTCGCCAGCTCCGATGACGCCGAATCTCGGTCAGGAACGGCCAACGCCGACCAACAGTGCTTCTCCGTTAAGTATACCGTTGGCTTCGTCGAACGCGACGGGCACAACCGTCGCCgtcgccgccgccgccgccaccaGCAGTAGTAGTCAAGTGCCAATTGCCCATCAAATGCCGCCGCTCTGCTCCATCAGCTCTTCCCTAGCCTCGTCAATAATAACTAACACCGATCCACCTCCGCTACACGAACCAAACACGCTGGAGATGCTGCAGAAGAGAGCGCAAGAAGTACTGGACAACGCCAGCCAGGGTCTGCTGGCTAACAACCTGGCCGACGAACTTGCGTTCAGAGGGGGCAAAGGCTCCCGTCTCTCTCCGTACGATTCAAAGTCCGGTAGCGGTCGCGGGGAGCCGTTCTTCAAGCACCGATGCCGTTATTGCGGCAAGGTGTTCGGCAGCGACTCGGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACCTGAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCTTGCTACAGCAAATCGCGTCTGGTCAAAGACCGATGCCGTCCccgccgccaccaccacctTCTCACCATCCCTCTTTTCACCCGGCGGCGGCGCACGGTTTTTTACCTCCTCAGCCGCCCCTGCCACTCAGTTTAGCCCTGCCCGGTATGCAACCTCTGTACAGATCACCAGTTGTCGCTCATCGGGACGATCAGGACGTGCCGGAGAACCTGAGTAAGCCTGTTACCACTGCCCCGACCACGTCCCCACATTCCCCCGCGGTTGTGTCGAACTCTCGTCATTCCTTTCACGACaatcaccaccaccaccaccaccaccaacaacaacaacaacatcaAAAGCAGCAGCTCGAACAGAGGGACGAGATCAAGCTTGAGCAACGATCACCTATGCAGGAGCAGTACCAACAGCATCCACAGCATCAACAACGTCCCACCAGTCAAGAAGCCACCACCGGGAGGATAACACCGAAGAAGGAACCGGAAGAGGCGGAGGAGCCGACGGAAGAAGAAAGCGAAGATTTCGAGGAAACGACCAGACGGTATTTAAATTCACCCCAATCGTCGGTTAATCCACCCTCTCAGCCGCAGACCTACGAAGACTGTAGTATGGACAGCAAAATCAGTGGCCGATTGGAAGGGGACGGCGACATGGAAGTTGACGAGGAGATCGAGGAACAACCTGAAAATTTGTCCGGTCGTGGGACGATTAATCGGTTGCCTCAGCATATCGTTGCGTACCCTGGTGCTTCTCCTGCCAGCAGTAGCGCGAGCAGTGGAAGTCTTCAAACCTCCTTCGCGGGAATTCTGTTTCCAGGACCACCTGCCCATCATCAAATACCACATCATCCTGCCTCGACAACTGTAAACGCGTCCGCAGTCTCGGCCAGCGACATGATCGACCCGGCCAAGGATCCAGCCATCTACTCCAGCCTCTTACCACGGCCGGGCAGCAACGACAACTCTTGGGAGAGTTTGATCGAGATCACCAAGACCTCGGAGACGTCGAAGCTGCAGCAGTTGGTCGACAATATCGAGCACAAACTGACCGACCCGAACCAGTGCGTGATCTGCCATAGGGTGCTCTCCTGCAAAAGTGCATTACAGATGCACTATAGGACCCACACCGGTGAACGTCCGTTCAAGTGCAAGATTTGCGGTCGAGCATTTACCACTAAGGGCAACTTGAAAACTCATATGGGCGTGCACAGGGCGAAACCACCGCTCAGGGTACTGCATCAATGTCCCGTGTGCCACAAGAAATTCACGAACGCGCTTGTTCTGCAGCAACACATACGTCTGCACACCGGCGAGCCAACGGAATTGAGCCCGGAACAAATTCAAGCCGGCGAGGTGAACGAATTCCCACCGGGTTATCCGCACCATCCTCTCGCCTCGTTCCTCCCGCAGGCCTTTCCACCGATTCATCCGGCAGGACCGGGCTTTCCGTTAGGCTTTCCACCGAGCCGGCAACAAACGATGGAACGGCAGCCTCAGGATAATGATGTAGACATCAAAGAGGAGTCGCAACAACACCGagagcagcaacaacagcaacagcaacagagGTACATTGAAGAGCAGAGCGAAGAGGTGGAGGAGCAAGAAGACGAGGAAGAGGACCGCAGGGACGACGACGAGAGGTGCGGCATGAACCGCGATAATCGAGGTGATGCGGAACAGGAGGACGAGCAAGATCGCGAGAGCGAAGATAACGAGCACAAGGATCCTCCTTTGCCCAATTTTTCCACCTCCCTAGCTGCTCTCGAGAACCAAGTGCGAACGATAACGACCACGGCCACGTCGGGCTTAGGAAACGCGGCTAGGTCGCCGCCTTTTCACCGGTACAACGGCAGCGAAAAGAGTAACAGTCCGCCAAATGCTGGTGCCCCTTTAGACTTGACACCCCGAGCATCGTCGACGCCAGCCTCGGTAGCATCGGTACCAACGCCGCCACCGCAGCTCACGCACCATCCACACCCGTTCGGCATGTTCGCAGGCCTTCTACAAGCGGTCTCTTCCTCACCGTCTACCAGCAGCATAGGAACCAGCAGCATAAATAGCGTCAGTTCGATGAACGCTGTGACTGCCGGTTCAGGCGCGGCTGGGCCCCTGGCGTCCCTCACCACGTCAGCCGTGTTGGCTGCCACCTCGACCTACAACCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACGTGTAACATCTGCTACAAGACATTTGCGTGCAACTCTGCGCTGGAGATCCATTACCGGAGCCACACGAAGGAGCGACCTTTCAAATGCACTATATGCGACAGAGGCTTTTCCACAAAGAACGATGGTTCCGGGCAGCAAGCATGCATCTGCGCGTCCCAACCGTTGCCCGCTAACAGTTCGATCACTTCACCCGATCCTCAGTGCGCCAGTAGTCGAGAAAAAGCGAAACGCAGGCGGCGGCGGCGACCTGAGGAGCGGAAGAGCCGGGGGCGGAAAGGAGCCGGAGGGGGGCGGGGGTTGACGCCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCACCCGCCCTCGGACTTCTACCCTCGGCGCACAGCCTCCTGGGCAATATGAAGCAGCACATGCTGACCCACAAGATCCGTGACATGCCGCCCCATCTGTTCGGCGATTCAAAGCAACAGCATCAGCAGCAACCCCAAGACCACGAAAGCTCGAGAAGTCCTATGTGCACCGACGATTCCAGTCTACCTCCACCTCCGCCGCCTCCGCCACCACCTCCACCGATGCCTCCAACTTCAATGGAGCAAGCCATTTCGGTGAAGAGATCCCCGTCCGAAGGGGACCTTCCAGCACCAAAGAGACCAGCCAGCGTGCCGAGCAAGCACTTGTGCCAGATATGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACTCACACGGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTGCACATGGGCACTCATATGTGGACCAACGGAGCCTCTCGTCGAGGTCGTCGAATGTCGTTGGACCTACCTCCCCTTCCTATCACGCCCAAGGATTCGGAGTTCCTCCAACGACGGCCGGATCTCTTCTACCCTTATCTACCCGCACCGTTCCTTAACGGCGTGCAGCAAAAACTGAACGAGATCTCGGTGATACAAAGTAACAACGGATTACCTGGCCACTCGGTGGCCGCCGGCAAGTACGCAGGATTGTTCGGCTCGGTGTACGCAGCCGGGGCTGGATTTCCGTTGGACAAACAACAAATGGCGGGGACCAACAACGGGCCCCTGATCGACGGAAAATCCTCGATCCCATCCGGGTCGATGCTTTTCCAAACGCCATCACCGTCCCACTCGCCCGGCACACCGTCGTCGAACGGTAGCAATCAAAACACCGGCGGCGTTCCTCCATGGACAGGTGATGCTCTTCAACATCATTTCGAGAGAGAGGCTGCTACAAGACCGGAGAACAACTCCACACCACCCACGGCTCGACTTCCGCCTCCGCCAGCGGCAAGGGGTGAAGGATTGGCCACGTGA
Protein Sequence: MSRRKQARPSRAHLEEDLVQQPPLLLNAVGNLNETREENDFTSDGEESAGGGGGGDEAVDLTASRSHQGDEDDKDQDDALEEDEEEGVDEQDEQEDDEEGSRKQMRHRQDAENNNNFVEGGTPASLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHSQSAQPQGTPEPSDSKEISPSPLIQPKPLSSLTSPPSSRPPSHQETSPAPMTPNLGQERPTPTNSASPLSIPLASSNATGTTVAVAAAAATSSSSQVPIAHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMQPLYRSPVVAHRDDQDVPENLSKPVTTAPTTSPHSPAVVSNSRHSFHDNHHHHHHHQQQQQHQKQQLEQRDEIKLEQRSPMQEQYQQHPQHQQRPTSQEATTGRITPKKEPEEAEEPTEEESEDFEETTRRYLNSPQSSVNPPSQPQTYEDCSMDSKISGRLEGDGDMEVDEEIEEQPENLSGRGTINRLPQHIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHPASTTVNASAVSASDMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQAFPPIHPAGPGFPLGFPPSRQQTMERQPQDNDVDIKEESQQHREQQQQQQQQRYIEEQSEEVEEQEDEEEDRRDDDERCGMNRDNRGDAEQEDEQDRESEDNEHKDPPLPNFSTSLAALENQVRTITTTATSGLGNAARSPPFHRYNGSEKSNSPPNAGAPLDLTPRASSTPASVASVPTPPPQLTHHPHPFGMFAGLLQAVSSSPSTSSIGTSSINSVSSMNAVTAGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNDGSGQQACICASQPLPANSSITSPDPQCASSREKAKRRRRRRPEERKSRGRKGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHSLLGNMKQHMLTHKIRDMPPHLFGDSKQQHQQQPQDHESSRSPMCTDDSSLPPPPPPPPPPPPMPPTSMEQAISVKRSPSEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPGHSVAAGKYAGLFGSVYAAGAGFPLDKQQMAGTNNGPLIDGKSSIPSGSMLFQTPSPSHSPGTPSSNGSNQNTGGVPPWTGDALQHHFEREAATRPENNSTPPTARLPPPPAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_01122603;
80% Identity: -