Basic Information

Insect: Osmia lignaria
Gene Symbol: -
Assembly: GCA_012274295.1
Location: NW:3313784-3321082[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.01 0.71 9.6 0.2 3 21 8 27 6 28 0.85

2 14 1 73 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.55 38 4.2 0.4 1 12 233 244 233 253 0.89

4 14 0.0079 0.55 10.0 3.1 1 23 364 386 364 386 0.97

5 14 0.00013 0.0093 15.6 0.2 2 23 390 411 390 411 0.97

6 14 0.00066 0.046 13.4 4.9 1 23 422 444 422 444 0.97

7 14 0.021 1.4 8.7 0.1 1 23 463 484 463 484 0.76

8 14 0.00039 0.027 14.1 0.1 2 23 490 511 489 511 0.95

9 14 2.8e-05 0.002 17.7 4.8 1 23 539 561 539 561 0.99

10 14 1.2e-06 8.5e-05 22.0 3.7 1 23 567 589 567 589 0.96

11 14 0.00064 0.045 13.4 3.9 3 23 597 617 595 617 0.97

12 14 8.5e-07 5.9e-05 22.5 0.8 1 23 623 645 623 645 0.98

13 14 5.4e-05 0.0038 16.8 0.2 1 23 649 671 649 671 0.99

14 14 0.00023 0.016 14.8 0.2 1 23 679 701 679 701 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.01	0.71	9.6	0.2	3	21	8	27	6	28	0.85
2	14	1	73	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.55	38	4.2	0.4	1	12	233	244	233	253	0.89
4	14	0.0079	0.55	10.0	3.1	1	23	364	386	364	386	0.97
5	14	0.00013	0.0093	15.6	0.2	2	23	390	411	390	411	0.97
6	14	0.00066	0.046	13.4	4.9	1	23	422	444	422	444	0.97
7	14	0.021	1.4	8.7	0.1	1	23	463	484	463	484	0.76
8	14	0.00039	0.027	14.1	0.1	2	23	490	511	489	511	0.95
9	14	2.8e-05	0.002	17.7	4.8	1	23	539	561	539	561	0.99
10	14	1.2e-06	8.5e-05	22.0	3.7	1	23	567	589	567	589	0.96
11	14	0.00064	0.045	13.4	3.9	3	23	597	617	595	617	0.97
12	14	8.5e-07	5.9e-05	22.5	0.8	1	23	623	645	623	645	0.98
13	14	5.4e-05	0.0038	16.8	0.2	1	23	649	671	649	671	0.99
14	14	0.00023	0.016	14.8	0.2	1	23	679	701	679	701	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAACCTTGTTTGCCCGATGTGCTGTGGCGAAACGTTTAACAATCCACAGTCGTTAAAGTACCATTTATTAAGCATGACGGACAACCTATACTGTCCTGGTTGTTCGCAGCGATCCGACTCGGTAATGGCACTCATTCAGCATTTGGATCGGTGTGGACAGAGTGTTGAATCTGATGATGTACCACCTGAGCCCAAGCATGAACCTGGACAAGAGGCTCAACAGGAGTCTGAACCGGACACAGAGGTGCTAATGgatGCAAATGTTGAGGGGATAGATCAAAGTTTCCTAGCAACGGTAAATGACAGTGGAATCATGATAGTTGGAGGGCCTCAAACTATACAAGTTGACGAAAATGGAGATATCAAAGTCGTAGAAAAGATGGACACTGAAGAGGCAGAGATGGAGCAAAATCCTTTGgaatttaaaatggaaaaagttcCTACTAGCAAAGCAGAAGAAAAACCTTTGTCCCAAGACCAACTAGTTACAATTTCCACTTCAAAAACAGATGATAAATGCagcaataaaaatgtaattactattttacCTGATGGCTCTGAACTGCTTGATGGTGACACCAATGCTCTGATAAATATGGATCACATAAATGATGTAGGTGAATTAGACGAAGATGGGCTATTACATGTGAAGCAAGAACTTTGCGAGATAGAACCGGAAGCAGTTTACAGTTGCACTAGTTGCGACATGAGTTTCAATTCTGTTGTGGAACACATAAAACAGTTTCACGACGGACAAGAAGTATTACTTGAAATAGCTGATCAGTTAGATGATATACCAGCTGTACCTGCAGCTAGTACCTTACCTTCAGAATCAGGAGGAAGCGTGGTTAATACTCGCCAGAGACAGAGTATGAATACACTTCGTACAGAAGAATGCGTAGACAGTGAAGGAAGATTGTATACAAGGAAAGTAGTACAAATAGAAAGGTTCTGGGATAGAAGTCCGGCTCAAACATCGCTTCAATCGGCCAAGGCACcaatgattgaaaaatttttttccaatgTGGAAGGAGTAAAGGTACGCGAAAAGAGATTGGAAGCAACTCCAATGAGAATGTATAGATGTAATCAGTGCCTTCAGCAGTTCTCGAAATTAGGAAATTTTCGAGTACACGCGTGTCTCCATGGCAATAATCGTTGCGACAGTTGTGATCAAACATTTGCAACACCCAAAGCGTTGCAACTACACGCGAAGGTACACGAGGGTGAACCTGATCCAAATCAAAAAACTTTCATATGTGAAACCTGTGGTACGGAGTTTTGTTCCCATAAAAGTTTGCGTTTGCATTCTCGAATGCACGCTCCGGTGAGAGCAAGACACGTTGACGCACCTGAAGGGACGCCTAGTGGAACATTTACATGCCCCGAGTGTGGTAAAACATTAGCGGAATCGTATAAAGAGGCGCATATGGCATTGCACTCCGGTGATTCTGTAACTTGCACAGTTTgcaatagaaaatttgattctGCTGATAGTTTAGCAATGCATGCTGCGGTACACACGGAACTTAGCCAACCACATTCACCAACACCACCTGCCATGGACACTGCAAGTAGTGAACCTTCAGAAAATCAGAAACCGTATCAATGCCAGCATTGTGGTCGAAGATTTACAAGACCTCACGAGAAAGTAAAACATGAACGTATTCATACAGGAGAGAAACCTCATGCTTGCGAGGTTTGCGGTAAAACTTTCCGTGTATCTTACTGTTTGACGTTACACATGAGAACTCATACCGGCGTCAGACCGTACGGATGTCAACATTGCGGCAAAAGATTTAAAGCTTCTTCGGTGTATAATCATCATTTACTTACGCATGGAGAAGAACGCGCGTACACGTGCCCGTATTGCCCGAAAACATTTAAAACACGCGTTCAACTTGCGGGACACAAGAACAGCCATACTAAACCATTTCGTTGCACCGAATGTTCCCGGCCATTTGCTTCATTATATGCCGCGCGTGCTCATATACAAACGCATAAAAAGGACAACAATTTGAAGTTCAGTTGTTATATATGCGGTGCATCATATGGTAGAGCGTTCGCATTAAAAGATCATTTGAAACAACATGGTCAGGATGTGCTAGCTCCACCTGAGCCAGCGAGGGAAGAGGAAATTCCAGAAGGAGAAGAGTTTTTACTAGCTGAAGAAGAAGTTGAAGATGACGAGTTGGTTATACCATCGCCTTTACCGGTTGCACAATCCTCAGAAGCTGACGACACGGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQSVESDDVPPEPKHEPGQEAQQESEPDTEVLMDANVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMDTEEAEMEQNPLEFKMEKVPTSKAEEKPLSQDQLVTISTSKTDDKCSNKNVITILPDGSELLDGDTNALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPAVPAASTLPSESGGSVVNTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRSPAQTSLQSAKAPMIEKFFSNVEGVKVREKRLEATPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSGTFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPAMDTASSEPSENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEIPEGEEFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -