Basic Information

Insect: Osmia lignaria
Gene Symbol: -
Assembly: GCA_012274295.1
Location: NW:207501-212803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 3.1 2.2e+02 1.8 0.1 3 17 104 118 103 119 0.91

2 22 1.8 1.3e+02 2.6 4.7 2 23 287 309 286 309 0.96

3 22 0.0026 0.18 11.5 1.2 1 23 359 381 359 381 0.95

4 22 0.027 1.9 8.3 1.2 1 23 430 452 430 452 0.98

5 22 0.16 11 5.9 2.9 1 21 507 527 507 531 0.90

6 22 2.9 2.1e+02 1.9 3.8 1 20 540 559 540 563 0.75

7 22 0.00016 0.011 15.3 2.0 1 23 568 590 568 590 0.98

8 22 0.00046 0.032 13.9 0.1 1 23 636 658 636 658 0.97

9 22 0.00045 0.031 13.9 0.1 1 23 664 686 664 686 0.97

10 22 7.1e-06 0.00049 19.6 1.1 2 23 730 752 729 752 0.97

11 22 1.1 74 3.3 4.2 2 23 760 782 759 782 0.90

12 22 7.6e-07 5.3e-05 22.6 1.0 1 23 789 812 789 812 0.98

13 22 0.0045 0.32 10.8 0.1 1 23 820 842 820 842 0.91

14 22 0.082 5.7 6.8 0.1 1 20 903 922 903 922 0.96

15 22 0.0023 0.16 11.7 0.2 1 23 941 963 941 963 0.98

16 22 2.1e-05 0.0015 18.1 0.7 1 23 977 999 977 999 0.97

17 22 4.8e-06 0.00034 20.1 1.6 1 23 1022 1045 1022 1045 0.95

18 22 0.11 7.5 6.4 1.6 2 23 1099 1121 1098 1121 0.92

19 22 0.03 2.1 8.2 2.2 3 23 1150 1171 1148 1171 0.91

20 22 0.12 8.7 6.2 0.0 1 23 1178 1202 1178 1202 0.96

21 22 0.00038 0.026 14.2 1.3 1 23 1207 1230 1207 1230 0.98

22 22 0.03 2.1 8.2 2.3 2 23 1260 1282 1260 1282 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	3.1	2.2e+02	1.8	0.1	3	17	104	118	103	119	0.91
2	22	1.8	1.3e+02	2.6	4.7	2	23	287	309	286	309	0.96
3	22	0.0026	0.18	11.5	1.2	1	23	359	381	359	381	0.95
4	22	0.027	1.9	8.3	1.2	1	23	430	452	430	452	0.98
5	22	0.16	11	5.9	2.9	1	21	507	527	507	531	0.90
6	22	2.9	2.1e+02	1.9	3.8	1	20	540	559	540	563	0.75
7	22	0.00016	0.011	15.3	2.0	1	23	568	590	568	590	0.98
8	22	0.00046	0.032	13.9	0.1	1	23	636	658	636	658	0.97
9	22	0.00045	0.031	13.9	0.1	1	23	664	686	664	686	0.97
10	22	7.1e-06	0.00049	19.6	1.1	2	23	730	752	729	752	0.97
11	22	1.1	74	3.3	4.2	2	23	760	782	759	782	0.90
12	22	7.6e-07	5.3e-05	22.6	1.0	1	23	789	812	789	812	0.98
13	22	0.0045	0.32	10.8	0.1	1	23	820	842	820	842	0.91
14	22	0.082	5.7	6.8	0.1	1	20	903	922	903	922	0.96
15	22	0.0023	0.16	11.7	0.2	1	23	941	963	941	963	0.98
16	22	2.1e-05	0.0015	18.1	0.7	1	23	977	999	977	999	0.97
17	22	4.8e-06	0.00034	20.1	1.6	1	23	1022	1045	1022	1045	0.95
18	22	0.11	7.5	6.4	1.6	2	23	1099	1121	1098	1121	0.92
19	22	0.03	2.1	8.2	2.2	3	23	1150	1171	1148	1171	0.91
20	22	0.12	8.7	6.2	0.0	1	23	1178	1202	1178	1202	0.96
21	22	0.00038	0.026	14.2	1.3	1	23	1207	1230	1207	1230	0.98
22	22	0.03	2.1	8.2	2.3	2	23	1260	1282	1260	1282	0.94

Sequence Information

Coding Sequence: ATGGACCGCTCGGTTCCAGTTTCAAATGTCGACGTACAAACAAAACGCTGCGTCCCTAACCTGCATTTAAAAAGCGCGTTTCGCTGGCAGGCAGAACATCGCAGGGAAAAATCAGAAACATTTAGGTCCACGATGGACGAAGTGGACGAGTTGCAGAATATGGAAAACGTGTGCAGGCTCTGCCTTTCTACCGACGAACCAAAGTTATCGGTATTCGGAGAGCAAGAGTCCCCGGTATCGTTAGCCAATAAAATACAGGCATGCCTATCAATTCAGATTTTAGCCACCGACAAACTATCAACCCAGATATGTGCAGAATGTGTCAAAACTGTGAATCAATGGCATAATTACAAGGAAGTATGTCTTCGTTCTCAAGACAAACTACATTTATGGCTAGAAAAACATGTACAAACACCCCCAGTGATTGCAAGTATCAAGAGCGAACCAGTGGACCTAGACTTTTATGATGACATTGTTGAAGTGATTTCAGAATCCACCAATGATTCAGATTTgGAGCCAATTAATCTTGAGGAAAGTACAGATAGTTTGGTGAATAATGTTCCAGTTCAAGAGCTAACTGATAATGAAATAGAAACAGAGAGGGATCAACCAGCATTGGCAAAGGATATGGacatatgtattataaaatcagAGCCACAAGATGACTATGATACAGATTGTACTATAGAGATAGAATCAGTTACAGGTAGTGAACTACCAAATCAGCTTACAGATAAAGATGATATAGTTATGGAAGCCGATTCTACGCAAAAGTTTAACGCATCCGCAACagtaaataaaaagagaaccAAACGGGGTCCGCACACTCATTTCAGAGGAACACgagtttttaaacaaaagtgtGTACATTGTCAAATCATTTTGCACTCTAAGCAATCTTATTCGAAGCACATGGAAAGATTCCATACCGATAAACAAAATGGTAGTACCGAGGTAGCCGAGTTACAAGATGGGGAAGAATTGGTCGAGGATTTAGAGGATGAGTTGATGAGCATGGAGAAGGATGCTCCCTTGACTCAAGTACAACAGAATATTATCAGCCAATTAAAAACGTACTTGTGTTACACTTGTCAGCAAACCTTTACCGATTGGAGGAGCACTCTCACTCATATCCGTGAACATATGCCCGATTTAAGGCCATGCACATGCATCGCATGTATGACGGAATTTCCGGATGGATCGATGTTCAAATTACACTGTGAAGTATCATTTGAGTGTGCAATGAAAATCGCATTAGTCATACCAAAACACGGCGAAGAGAAGTATTTCACGTGTAACATGTGTTTACGCGCTATGCGAAATAGAAAGGAACTACTCAGTCATCTCTCGAAACACTCCGATAAACAGTACGAGGAACTGGTGTCGCCTTCACGATCTCCCCCTAAATTGAAACCAATGACCCCGCTACCATCTCCTAAACAGAAGCAAGTAAACAAAGTGCATGAAGCTAAATTAGAGATACCCAAACCCTACAAAAACGGCGATGCCGCATATAATCACGTTTGCGATTTATGCGGAATGATTTATAAGTTCAGACCTAACATGTTGAAGCACAAAAATCTATGCCAGCATTTGCCACCGGAGAATAGAACATCCTACAGATGCGTCCACTGTGGAATGACGTTCCTTGTGTTTAAAAAGTATCACAGCCATATTACGTTCGATCACAAAAAGAAGGATTTCACTTGTTCCATTTGCAACGCCAAATTCAGGTCTCCAAGCGATTACTTGACACATCACGAATCGCATCGCTCGACTCGCAATAAGAAGTCATCACATGAAAGTAGTGAATCATCCTCCATGCCAAACATATCGACGCCTATCAAAGACTGGGACACCTTTGAGGCTGAAATGAACGCGAGCAAGATAACCAACAGTAATCAGTACAGCTGTGCTCTTTGCAACCTGGAGTTCGCTACCAGAGCCGAACTGACCGAGCACAGAAACCTTCACTTGAAGGTGAAGATCTATTCCTGCGTTATTTGCCGTAGCATGTTTAGCAGCGCTGGTGCTTTGGAGATCCATATGAAGGATCACGGTATAGAGGATCCAAACGAGAGGGACGCAAACATCTCATGTGTAGAGTACGGAACGACGAAACCTGAGCTGGAAAAGTCAAAATCAGTAAATATCAGCGCAACTTCAGATCCTGGCACGGCCAAGAATAAGTGTAACACGTGCAGTAAAGTATTCTCCAACTACGCGAATGTCAGACGACATATAAGGAACATACACAAATCGGGCAAGGCGCATATCAGATGTACCGAATGTCCTCAGATGTTCAGGAGCACCTTTACATGCCATCGTCATGTAATGCAGGAACACAAGTCCTCGAAGACTGCGTTCCAGTGTCCCCAGTGTCCAAAGACCTTCGTCTTCAAAGCGAACATGAACCAACATTATCGAACTGTGCATGGCTCTGAAACGCCTGGTAGTTACGCTTGTGACATCTGTGGCAAGACATTCTTGGAAGAAGCATCTCTGAAGATACACAGGGGTTGGCATAACCGAACCAATTTTCGGTTAACCGCTGATCTCGCAAATGAAAAAGATCAGAAGAAGCAAATACTCAGAAATATGACCTCGCTGAAACAAGAGGAGCAGTCGTTGACCGGGACCTCGAGCAGGCCAGCTAGAGCAAAAAAATCCTTCCCAAGCCCGCCATCGTTGAAGAGCAGCGCTGACTATCAATGCCAGGTTTGTAACGACAAGTTCAATGATGTGGTGGAACTGAGGGAACACTTATGGGATGTTCATTGTGCTCGTAACAAGTCTGAGAAGAATTTCACCGACAACAAGTTCCAATGCGATCTCTGTACGTACATTCTACCTGACCAGGAATCATTCAACATGCACATGCAGTGGCACAAAGTTCATCCCATCCTAAGCAACATCGGTAAACCTTCCTTCCCTTGCGAAATCTGTGGGAAAAACTACAGTTCCAAGAAGGTATTGTGGAGACACAAGAAGCTTCACAAAGCCACCACCGTGGCTACTGCTAAGTTCCAATCGATCACCAGGAAACCCACCCTGTCGAGCCAGTACACGTGTAATATCTGTCGCAAGGCATTCAGCAGCAACCAGTCGCTACAGCGTCATAAACTGAACTTACATGCCAACATATTCAATGAACGAGCACAGATGATGTTTAACAACACGGCAAAAATTCCTCAAGAGGAACCGAAATCAAAGAGAGTGAAATTAGAAGTAGATGATCCGACGCAGAAAGTATCAGAAGCCATGGACGCTTTACGCGCTGGCAAGAAGGCCGTAATGTGCCACGTCTGTAGAAAGTTCTTCCCCAACATGAGTATACTGTACAAGCACAAACAATATGCCCATAACAAGTCTCGCGTGGTGAAGAACATCGTGAAGCCCTCAACTGTCGAGTGCATCCCGTTGGCCGCACCCGAGGGCCGGGTATGCTGCAACATTTGCTTCAAGGAGTTCTCCGGTGTGTCAAATATGCGGCAGCACTTTACCGTGAAACACAAGAATACCACCCTCAAGTACGCCTGCCCAGTCGAGGGTTGTAAGTTAATGTTTCTAACTCCGGTCGCCCTGAAGAATCACGAGCTATCACACACCTCGATGATCTACAGTTGTAACCTCTGTGGCAAACACGTGTTTAGCAGATCAGCAATGTCCACTCACATGCTGACCGTGCATAAGACAGTCTACTATGCCGAAGAGAACAAAAATTTCCACAGAGAGACAGACTTGCACACCTATGTGGTGGAAGGTGCAGTGGATGCAACTTGTCCTCACTGCAAGATCAAGTATCCCAACAACAGAGCCATGAAGATTCATTACTTCAAGTTCCACGATGACACGAATCGTTAG
Protein Sequence: MDRSVPVSNVDVQTKRCVPNLHLKSAFRWQAEHRREKSETFRSTMDEVDELQNMENVCRLCLSTDEPKLSVFGEQESPVSLANKIQACLSIQILATDKLSTQICAECVKTVNQWHNYKEVCLRSQDKLHLWLEKHVQTPPVIASIKSEPVDLDFYDDIVEVISESTNDSDLEPINLEESTDSLVNNVPVQELTDNEIETERDQPALAKDMDICIIKSEPQDDYDTDCTIEIESVTGSELPNQLTDKDDIVMEADSTQKFNASATVNKKRTKRGPHTHFRGTRVFKQKCVHCQIILHSKQSYSKHMERFHTDKQNGSTEVAELQDGEELVEDLEDELMSMEKDAPLTQVQQNIISQLKTYLCYTCQQTFTDWRSTLTHIREHMPDLRPCTCIACMTEFPDGSMFKLHCEVSFECAMKIALVIPKHGEEKYFTCNMCLRAMRNRKELLSHLSKHSDKQYEELVSPSRSPPKLKPMTPLPSPKQKQVNKVHEAKLEIPKPYKNGDAAYNHVCDLCGMIYKFRPNMLKHKNLCQHLPPENRTSYRCVHCGMTFLVFKKYHSHITFDHKKKDFTCSICNAKFRSPSDYLTHHESHRSTRNKKSSHESSESSSMPNISTPIKDWDTFEAEMNASKITNSNQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERDANISCVEYGTTKPELEKSKSVNISATSDPGTAKNKCNTCSKVFSNYANVRRHIRNIHKSGKAHIRCTECPQMFRSTFTCHRHVMQEHKSSKTAFQCPQCPKTFVFKANMNQHYRTVHGSETPGSYACDICGKTFLEEASLKIHRGWHNRTNFRLTADLANEKDQKKQILRNMTSLKQEEQSLTGTSSRPARAKKSFPSPPSLKSSADYQCQVCNDKFNDVVELREHLWDVHCARNKSEKNFTDNKFQCDLCTYILPDQESFNMHMQWHKVHPILSNIGKPSFPCEICGKNYSSKKVLWRHKKLHKATTVATAKFQSITRKPTLSSQYTCNICRKAFSSNQSLQRHKLNLHANIFNERAQMMFNNTAKIPQEEPKSKRVKLEVDDPTQKVSEAMDALRAGKKAVMCHVCRKFFPNMSILYKHKQYAHNKSRVVKNIVKPSTVECIPLAAPEGRVCCNICFKEFSGVSNMRQHFTVKHKNTTLKYACPVEGCKLMFLTPVALKNHELSHTSMIYSCNLCGKHVFSRSAMSTHMLTVHKTVYYAEENKNFHRETDLHTYVVEGAVDATCPHCKIKYPNNRAMKIHYFKFHDDTNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01122601;
90% Identity: iTF_01122601;
80% Identity: -