Basic Information

Insect: Osmia lignaria
Gene Symbol: -
Assembly: GCA_012274295.1
Location: NW:735421-739866[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00079 0.055 13.1 1.6 1 23 258 280 258 280 0.97

2 11 0.032 2.2 8.1 0.1 1 20 288 307 288 309 0.90

3 11 0.00042 0.029 14.0 2.0 2 23 368 389 367 389 0.96

4 11 2.9e-07 2e-05 24.0 1.6 2 23 440 461 439 461 0.97

5 11 2.1e-05 0.0015 18.1 0.9 1 23 466 489 466 489 0.96

6 11 1.9e-05 0.0013 18.2 0.4 1 23 526 548 526 548 0.97

7 11 4.9e-07 3.4e-05 23.2 0.9 1 23 558 580 558 580 0.96

8 11 1.4e-06 9.6e-05 21.8 1.2 1 23 586 608 586 608 0.99

9 11 7e-06 0.00049 19.6 0.2 1 23 614 636 614 636 0.98

10 11 5.3e-05 0.0037 16.8 4.6 1 23 642 664 642 664 0.98

11 11 0.00021 0.015 15.0 0.4 1 21 670 690 670 691 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00079	0.055	13.1	1.6	1	23	258	280	258	280	0.97
2	11	0.032	2.2	8.1	0.1	1	20	288	307	288	309	0.90
3	11	0.00042	0.029	14.0	2.0	2	23	368	389	367	389	0.96
4	11	2.9e-07	2e-05	24.0	1.6	2	23	440	461	439	461	0.97
5	11	2.1e-05	0.0015	18.1	0.9	1	23	466	489	466	489	0.96
6	11	1.9e-05	0.0013	18.2	0.4	1	23	526	548	526	548	0.97
7	11	4.9e-07	3.4e-05	23.2	0.9	1	23	558	580	558	580	0.96
8	11	1.4e-06	9.6e-05	21.8	1.2	1	23	586	608	586	608	0.99
9	11	7e-06	0.00049	19.6	0.2	1	23	614	636	614	636	0.98
10	11	5.3e-05	0.0037	16.8	4.6	1	23	642	664	642	664	0.98
11	11	0.00021	0.015	15.0	0.4	1	21	670	690	670	691	0.94

Sequence Information

Coding Sequence: aTGGAAGTTTCAAAAAGTGAGCATCTACTTGATACCTGTGAACAAATTTACGGGGACGAGTGTAgaatatgtttaaaaagaGCCGTTGAAATTTGcgaattatttagaaatggAGACGCTATTCCTCATAAACTTATGGCCGTTGCTTCTGTACAGGTGGAACAAGGTGATGGTTTACCTCCAGTGATTTGTGTACCTTGTAATCAACGTTTGGATGCATCTTATGATTTTAAATgtcaaatacaaaattcagatgaaaaacttcgtcaatttttaaaattaaaatccgataatgattcaattagtaGCACCACCATAGTTACAGCAATAATTGCTGATGTGATATCTAATGTAATATCTTCTGAGAAAGAAAGCTCAGTTAAGCCAGAAATTTGTTCTACAGATTTTTGttctgataatttttcttttacaaaggATGATTCTTTTTGCCTTAGTTCAGAAAAGAACTTATTTTGTTATGAAAAGGAATCACAAAGTCAATTGAATGataaagaacaaaagaaaagcACAGAAAATGTAGATATTTGTACAAGTTTGTTAGAAGAAGATTCTCTAAGGTGcgttaattttgttaaacaacAAGAATTGCATTTATCGGATACTTGCAAGGTACAAGACAAGGATACTAcatcaaaaattgaaattagtaaCCAAGTATCTGAAAATCAACAAATGTTAGAAGAGACATTAAAAACAGATGGTGGTGCACAAGACGATGAGGAGAAACCTTTAATTGTACGTGCAACTAGATTTCGTTGTACGCAGTGTATTAAGTCATTTCATACAAAAGTGGCCTTGCAGAGACATGCTATTGTACATAAGCGTAAAACTAAATTGCGGTATGTCTGTTATGTTTGTGATAAGCAGTATTCAACTCTTGTGAAAGCAAAAAGTCACGTAGCAATTTGTCGTGAAGCTCATGacaggaaagaaaatattcaagataaaaaaatCAGTTACAAGCAAGAACAAGAAGTTGCAAATGTGCAAGataaaaagtttaataatattcaagataaaagaataaaaattcagaaaaatgataattcttttaaagaacaacgaaaaagtttaaaattgaattgtaaaGTTTGTTCAAAACAATTTACTTATCAAAAGTCGTTTATAACACATGCTAAAAGTCATCCAGAATATAAGTTACAAGAATTGGATGATTCTTCTCTGTGTTCGACAAAAGAAAAGTCAACAGAAAATCTGGAAGAACAGgaggaagaagatgaagaagaggatgaagaagaggaCGACGAAGACGAGAACCTTCCTGCTGAAAGTCTACAGTGCACTCAATGTGGAAAGTTATTTGCAACaaagaaaaatcttaaaaGGCATATTTCTACGCACAGCGGATTAAAATACACTTGCGAGAGGTGTGGTAAAGGATTTTCAAGAatagacaaattaaaagatcaCGAACAATCAAAACACAAGTCTGAAGTATTTGAAGACTCTGATTTTTCTGACAAAGAAGATATGGATGATATAAACAGGGGGGATTGtttagaaggaagaaaaaaaGATCGTGACAACAGACCGCACAAGTGTGCAATGTGTCCTAAATCCTTTGCCCAAGCTCAATCTTTAGCGAATCATGTTGAACGTCATAAACGTGTTAAAGAAACCCAGAAAAGGTTTCTTTGCGAGGTTTGCAGTAAATGTTTTGCGCAAAGTGGTTCTCTTGTTGCGCATATGCGTACACATACAGGAGTTAAACCGTATGTTTGCAATGTGTGTAGTAGGGCTTTTACAAAGAGCACTTATTTACAACTGCATTTACGTACACATAGCGGAGAGAAACCGTATATTTGTCAATATTGTAGTAGAGCTTTTGCGCGTGCAAATACATTGGCACGGCACATTACCATGCACACAGGAGAAGCGAAGTATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACCTCATTGAACGAACACACTTATACGCATACTGGTCAACGACCATACGCCTGCAAAATTTGTACAAAGAGATATAATAATGCTGGCTCGCTTTACGCGCATAGAAAAAAGTGTAAAGCACAGCAGTTATCTAATAGTGGATTTACAGTTTCTGTAGAAAACTCGATATCGCACCAAGATATAAACGTTCCACAGGTTTTGATTTATTCACAGCGAAAATTAGTAGAAGACGCAACGGTTGGACAGGTTACACCCACGCCTCAGTACATGATTCCAAATGTACATAATCAAAAGAGTTTGGgatcaaatattattcaacCATTTACGATGGAAGATCCAAATGGTTATACAATTAATTCAAAACCATTTAAAAACCCCTATTATACGATATATccaaatatgtaa
Protein Sequence: MEVSKSEHLLDTCEQIYGDECRICLKRAVEICELFRNGDAIPHKLMAVASVQVEQGDGLPPVICVPCNQRLDASYDFKCQIQNSDEKLRQFLKLKSDNDSISSTTIVTAIIADVISNVISSEKESSVKPEICSTDFCSDNFSFTKDDSFCLSSEKNLFCYEKESQSQLNDKEQKKSTENVDICTSLLEEDSLRCVNFVKQQELHLSDTCKVQDKDTTSKIEISNQVSENQQMLEETLKTDGGAQDDEEKPLIVRATRFRCTQCIKSFHTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLVKAKSHVAICREAHDRKENIQDKKISYKQEQEVANVQDKKFNNIQDKRIKIQKNDNSFKEQRKSLKLNCKVCSKQFTYQKSFITHAKSHPEYKLQELDDSSLCSTKEKSTENLEEQEEEDEEEDEEEDDEDENLPAESLQCTQCGKLFATKKNLKRHISTHSGLKYTCERCGKGFSRIDKLKDHEQSKHKSEVFEDSDFSDKEDMDDINRGDCLEGRKKDRDNRPHKCAMCPKSFAQAQSLANHVERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNSGFTVSVENSISHQDINVPQVLIYSQRKLVEDATVGQVTPTPQYMIPNVHNQKSLGSNIIQPFTMEDPNGYTINSKPFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: -
80% Identity: -