Olig003067.1
Basic Information
- Insect
- Osmia lignaria
- Gene Symbol
- -
- Assembly
- GCA_012274295.1
- Location
- NW:4882-10067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.54 38 4.2 0.7 5 20 329 344 326 346 0.89 2 16 0.021 1.5 8.7 1.1 2 20 383 401 383 403 0.91 3 16 0.001 0.072 12.8 5.0 2 23 446 468 445 468 0.94 4 16 0.006 0.42 10.4 0.1 2 23 475 496 474 496 0.93 5 16 2.1e-06 0.00015 21.2 3.4 1 23 502 524 502 524 0.96 6 16 0.00017 0.012 15.3 1.9 1 23 533 555 533 555 0.96 7 16 6.3e-06 0.00044 19.7 0.9 1 23 561 583 561 583 0.98 8 16 5.2e-07 3.6e-05 23.1 1.0 1 23 588 610 588 610 0.97 9 16 0.0014 0.099 12.3 5.5 1 23 617 639 617 639 0.99 10 16 2.8e-05 0.0019 17.7 1.1 2 23 659 680 658 680 0.97 11 16 3.8e-05 0.0026 17.3 0.6 2 23 688 710 687 710 0.96 12 16 0.33 23 4.9 0.5 1 23 716 738 716 738 0.92 13 16 0.00016 0.011 15.3 2.7 1 23 744 766 744 766 0.98 14 16 3.3e-06 0.00023 20.6 5.5 1 23 772 794 772 794 0.99 15 16 2.8e-06 0.0002 20.8 2.5 1 23 800 822 800 822 0.98 16 16 0.0017 0.12 12.1 2.3 2 23 828 849 827 849 0.94
Sequence Information
- Coding Sequence
- ATGAGAATAGTTTGTGCCGCAAAGAATTGTAAATACTCTTCAATTAATGAAGACTCGAGGCAAAtcatgtttattaattttccaaatgatGCTACCTCAAAGATATGGGCACAACACTGTGGTAGAACGGaccttttattaaaatcaaacgaagaactgcatttaaattattatatatgttCTCATCACATAGAAGATCATTATTATATAAGCAAAATAGATCCTGTTATAATAGATGCGCGTGCAGTTCCTACATTATTTGGATCAGATTTTGTAACAGAGAAGGATGCaagaaatgttttttatacGAATGAAGAAACAGAAGTAACAGACAGTGCCGTATTATCATACTGTGATACGAATGTTGAAGTAGATCAGTATCATGGTATTAGTattagattttcaaatttatgtCGAATATGTGGAGAACCATCTGTGGACGGcatagaaatatttgcaacgaaaggaatagaattaaaattaaaagaaaaaattaacttaCATCTGCCAGTAACTATAGATGTGAAAGATGTAATGCCACAAAAATTATGCTTGAACTGTTGCAACAAATTGGACATAGCACATTCGCTTATTATAACTTCTTTACGAACAgatatgaaattgaagaaatttctaaatattaacgAAGAATTAAATTATGACAATAGGTATAACAAAATAGTTCAACAATGTTCATTAGAGATTGCCGAAGAAATGTGTACCAATGAAGAGACACAAACAACATTGATAGAATTGTCTTCTAATAATATGGGAGATAGTTCTGTAAATCAAGAAATTActggaaaattaaatcatttagaaGAAATTCACACTATAAATAACATAGAAGACAAAATGCAATCTGAATTAAATAGCTTTATTGAATCGCACaataaaaggaataaagaagATGAATGTACAAATAAAACCATGCAACATTATCCGAAAAATGgtgtaatcaattttaataaaatttcatgtattcGCTGCAATAATTCGTTTAAAAGTCAAGAAATGTTCGAAAATCATAAAATGTTCTGTTATGTAAAAGAAACTacagtaaaaaaagaaaaagagattaaTAGTAATATAAATAGTAGAGATTCTaataatgtagaaataaaCTTGGAatgtatttcaaaagaaaGTTGCAATACATGCCACAAGAATTTTGCGAATGAAAAACGTTTAATTGAACATAAGCTTTcgtattgtacattttttgaAGAAGAACAATATAAACTGTCCAATAAACCAAATGCAAATGAAGAACAATATGGTACTGATAAAGATACGTGCGatactattaatattacattgatcgaaactaataaaaaatgtggACATTGTgacagaatttttaatactaaaaAGGAACTGCTGAGTCATATTACGCAATGTCATAAAAGTCGATTGTTGTTAAAGTGTATTATATGTGACAGGAGTTATGAAAAATGGTCAAGTTTAGATGTACACGAAGCTACTCATAGAATAGATAAACCTTACCTATGTGATTTATgtggtaaaagttttaaacaTTCTAACAATTTAAGGGGTCACAAGAGAACTCATTTAGATGACTCCAAAAAAAAACGACACATTTGTGAGATTTGTGGAAACGCATTCAGATCTAGATTTCATTTGGGCGAGCACATGAATCAGCATAATGGAAATAAACCTTACCCTTGCGACAAATGTGGAAAagcattttataaaagaatacaATTAAGACAACATACTTTGTCTCATGGTTTGAATAAACACGTTTGTCCAATATGTGGTACAGCGTTTAATCGTAAAGGGAATATGAATACACATCTTAAACGTCATAACAATGGAAATGGCATGTACACGTGTAGTGTTTGTACATACAGATGTAAAACGATGAGCGAATTAAAGTTACATAGAAAAAAGCACACGGAACAGGACATTATAGATAGTATACGAAAAAAGTGTATTGATAAGACTATATGGCAATGTAAAAGTTGTAATCGGATATTTTCTACACGAACAGCCTTATTAAATCACGAGCGTACtcataaaaaagagaaaatgaatataGAATGCAATGTTTGTGGGAAGAAATTATCGAGTAAATATTCTTTGATCTATCACAAGAGGTCTATGCATTCTACGGAGAGACCACATATGTGTCAGTATTGCGGAGGATCGTTTCTTTCCAATGAAGCACGTCTTATACACGAAAGAATACACACCGGAGAACGTCCTTACGTATGCAAAGTGTGCAATATGGAATACAAATGTTCCAGCAATCTTAATCAGCACATGAAAATCCATTCTGGCGCAAAACCTTACAAATGTAAACACTGTAGCAAGTGTTTTACTCGGAAGGGTGCATTAAGCGTGCACGAAAGAGTTCATACCGGTGAGAAACCGTTTTCCTGCGACACGTGTGGCAGAACGTTTTCACAAAAGAATGACATGTTAAAACACACCAAAACACACCAATCGAAATCTCTGCATTGCGAACAATGTAACGAAACGTTTACAAGAAAAAAGGATATCTTGAAGCATGTTACGCTACACGAGCAGAATAATTCTATGATTGAAGAATATGTGGAAGTCCAAAAGCAAGTGGAATCTTATAATATAGATATACCTTGTTctcaatttcaataa
- Protein Sequence
- MRIVCAAKNCKYSSINEDSRQIMFINFPNDATSKIWAQHCGRTDLLLKSNEELHLNYYICSHHIEDHYYISKIDPVIIDARAVPTLFGSDFVTEKDARNVFYTNEETEVTDSAVLSYCDTNVEVDQYHGISIRFSNLCRICGEPSVDGIEIFATKGIELKLKEKINLHLPVTIDVKDVMPQKLCLNCCNKLDIAHSLIITSLRTDMKLKKFLNINEELNYDNRYNKIVQQCSLEIAEEMCTNEETQTTLIELSSNNMGDSSVNQEITGKLNHLEEIHTINNIEDKMQSELNSFIESHNKRNKEDECTNKTMQHYPKNGVINFNKISCIRCNNSFKSQEMFENHKMFCYVKETTVKKEKEINSNINSRDSNNVEINLECISKESCNTCHKNFANEKRLIEHKLSYCTFFEEEQYKLSNKPNANEEQYGTDKDTCDTINITLIETNKKCGHCDRIFNTKKELLSHITQCHKSRLLLKCIICDRSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICEICGNAFRSRFHLGEHMNQHNGNKPYPCDKCGKAFYKRIQLRQHTLSHGLNKHVCPICGTAFNRKGNMNTHLKRHNNGNGMYTCSVCTYRCKTMSELKLHRKKHTEQDIIDSIRKKCIDKTIWQCKSCNRIFSTRTALLNHERTHKKEKMNIECNVCGKKLSSKYSLIYHKRSMHSTERPHMCQYCGGSFLSNEARLIHERIHTGERPYVCKVCNMEYKCSSNLNQHMKIHSGAKPYKCKHCSKCFTRKGALSVHERVHTGEKPFSCDTCGRTFSQKNDMLKHTKTHQSKSLHCEQCNETFTRKKDILKHVTLHEQNNSMIEEYVEVQKQVESYNIDIPCSQFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01122595;
- 90% Identity
- iTF_01122595;
- 80% Identity
- -