Basic Information

Insect: Osmia lignaria
Gene Symbol: -
Assembly: GCA_012274295.1
Location: NW:1646263-1651709[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.021 1.5 8.7 2.3 1 23 372 394 372 394 0.95

2 18 0.00067 0.046 13.4 0.7 2 23 429 450 428 450 0.98

3 18 0.016 1.1 9.0 3.8 1 23 558 580 558 580 0.93

4 18 0.0016 0.11 12.2 0.4 2 23 584 605 583 605 0.96

5 18 0.17 12 5.8 2.3 1 23 674 697 674 697 0.93

6 18 0.00038 0.027 14.1 0.8 1 21 703 723 703 727 0.92

7 18 0.015 1.1 9.1 5.0 2 23 808 829 807 829 0.95

8 18 0.00014 0.01 15.5 4.2 1 23 882 904 882 904 0.96

9 18 0.00018 0.013 15.2 0.7 1 20 909 928 909 930 0.94

10 18 0.027 1.9 8.3 0.5 2 23 941 962 941 962 0.97

11 18 1.8e-05 0.0013 18.3 0.6 2 23 1001 1022 1000 1022 0.97

12 18 1.7e-05 0.0012 18.4 1.6 1 23 1027 1049 1027 1049 0.95

13 18 9.4e-05 0.0066 16.0 2.9 1 23 1055 1077 1055 1077 0.98

14 18 3e-06 0.00021 20.8 0.4 1 23 1093 1115 1093 1115 0.95

15 18 2.4e-07 1.7e-05 24.2 0.6 1 23 1121 1143 1121 1143 0.99

16 18 2.6e-05 0.0018 17.8 0.2 1 23 1149 1171 1149 1171 0.97

17 18 9.7e-05 0.0068 16.0 4.1 1 23 1177 1199 1177 1199 0.96

18 18 0.0069 0.48 10.2 0.4 1 20 1205 1224 1205 1226 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.021	1.5	8.7	2.3	1	23	372	394	372	394	0.95
2	18	0.00067	0.046	13.4	0.7	2	23	429	450	428	450	0.98
3	18	0.016	1.1	9.0	3.8	1	23	558	580	558	580	0.93
4	18	0.0016	0.11	12.2	0.4	2	23	584	605	583	605	0.96
5	18	0.17	12	5.8	2.3	1	23	674	697	674	697	0.93
6	18	0.00038	0.027	14.1	0.8	1	21	703	723	703	727	0.92
7	18	0.015	1.1	9.1	5.0	2	23	808	829	807	829	0.95
8	18	0.00014	0.01	15.5	4.2	1	23	882	904	882	904	0.96
9	18	0.00018	0.013	15.2	0.7	1	20	909	928	909	930	0.94
10	18	0.027	1.9	8.3	0.5	2	23	941	962	941	962	0.97
11	18	1.8e-05	0.0013	18.3	0.6	2	23	1001	1022	1000	1022	0.97
12	18	1.7e-05	0.0012	18.4	1.6	1	23	1027	1049	1027	1049	0.95
13	18	9.4e-05	0.0066	16.0	2.9	1	23	1055	1077	1055	1077	0.98
14	18	3e-06	0.00021	20.8	0.4	1	23	1093	1115	1093	1115	0.95
15	18	2.4e-07	1.7e-05	24.2	0.6	1	23	1121	1143	1121	1143	0.99
16	18	2.6e-05	0.0018	17.8	0.2	1	23	1149	1171	1149	1171	0.97
17	18	9.7e-05	0.0068	16.0	4.1	1	23	1177	1199	1177	1199	0.96
18	18	0.0069	0.48	10.2	0.4	1	20	1205	1224	1205	1226	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTAGAAATAAATACATCGGATTCGTCACAAAACGAAGAAGGCATCGTCTCCACGGTAGAAATATGCCGTGTTTGCCTTCTTGGTAATTTAGTGATGAGAGACTTGTTTCTGGAGAACGAGGTTGATTCTCTTTCAGCAAAAGCGATGAGTTTCGCCAATGTTAAGATGTTACCCGGGGATGGTTTACCGTCCCGCGTCTGCTGCATGTGCGCAGACAAGCTAGAATCCGCGTACGAATTTAAGTTACAAGTGGAACAAGCAGACACAGTTCTTAGAGAAAGATTTGTCACTATGAACATAAAGGAGGAGCTGTTCTTCAATGAAGTTGAAGTACATCTAGATGCTGGAGAACGAAACGAGGGTATAGGGGAGATACATATAGATAATCATTATCAGAACAACACGGGAAGCCTAGCACCCATGAGCCAAGAAGAGAAATCATCTCTCTTAAAGGATCAGTTGGCTCTGTTACAAGTGGAAAAGCTGACTGAAAATGAACAGGCTATGAGAGAACAGAACAATGGTCAAGCAATGGAAGAAGTAATTGATCAAACAATTACAACAGAACAAACGTCAGAGGATTGTCTGAATCACGAGGAGGAGGCTGTAAAAGCGATCGCGGAGGCCGCCAAAGGAGACGATGAAATGTTGAAGCACCAAAGTAGGGATAATAATTACATCGAGAGGATTCCACCCATGGAACACGATTATATACTGCAACAAGAATGTATATTGTCCAATGATGGTCAACAGGAGCAGCAagagcaacaacagcaacagcagcagcagcttAACGATTCCGAGGAATCGTTTCCCCGCGAGGATTGCGCggaatatgtaaatttattggTAAAGGCGGCCGATGTGACGAGTCAGGAAGATGAAGACGAAGAGGAACAAGAAGAGCCGGACGATGCAAAAATGGatattaaaatagaagaacattCTATCTGTCAGAACGAAACAAGAAGAAGTAAACGTAAATTGGCTCGACGAAGCTTCGACGCGAAACAGAATTCcgacgaagaaaattattttgaaaatctaaatttaaGCTCGAGATTGAAAACCGTCGAGCCCTCTGATAAATCTGACAAAGTATTCTTCCTCTGTTATCTCTGCGACAAGGAGTTCCTGTCGAAGAGCGTTTTGAAGGAACATATGCACTCTCACGAGGAAGTTAGAAAAGCGTTGTCCTTAAAAAAACCATCAGAAACACCTGAAAAGAGTGTATGCAATGTGGCGAAGTCGCCTCCATCGGGTAAAAGATCCAACAAATGCCCTTACTGTGGCAAACAGTACATCTACATAATTTCGTATAGCAAACATTTGAAGAAGCACGAACGAGAGAAGGAAGAGGGTAAGGAGGACCCGATGCCGTTAGAAATCTCGTTTCACGAGGACGAGCACAGTTTGGACCTCGAGGATTACGAGGACGCGCAGCATTCGAATTCCGAGTGTCGGAAAAGAGCTAAGAGGAAAGACAGTTTCGCTAgaacgaagacgaagaaaatagaagacgacgacgacgacgacgacgatgaggATGAAGAGCATGGACAAGACGAGGACGAAGACGAGGAAGGAGAGAACCGAGAGGAGAAAGGCAGTAATTCGACCAGAGAAGAGGAACAAGAAAATCAAAGCATGGAAACTTTTCCGTTCGCTTGCGACAAATGCTCGCAGAAATTCCATACGAAGCGTGGTCTACGAAAACACTCCGTTTCGCACGTTGTCCTTAAATGCAGTATCTGCGAGGAGGAGTTCGATTCGATGGAGAAGCTAAGGAACCATCGTGCGAAGCATGTCGTCGAAGGCGTGTTGAGCGAGCAGGATTTCGAAGCCGATACGACAGAATACACCATCGAAAAAGAGAGCGGAGATTACGGAAtggagaggaaagaaagcgGGGAAAGAATCGAAGACGAAGATGGTGGCGAAGCGGGGCGTGTTGAATTAGAGAACGGGTCTGGGAAAAGCGACAGAAACACAGAGACACAGGGGCACGAGTATAGTTGCAAGGCGTGCTGTCAGCGGTTCCCGAGGAAAGATTTGTTGCTGAAGCACGTGGAACAGCAGCACGAACGCGTGAAAAGTTTCAAGTGTACCCAGTGTAACAAAACGTTCGGTAACGAGCTTACATTGAGAAATCATCTCATAGCAACCAATCACAAAACTTTCATTCATGGACAAGAGTACGATCCTAACAAGCGGATCAAACGAGTCGCCGCGAGAGCGGCGCAGAAGATCATCGATAAGATTAAAACGGAGGACGGTTTGGAGGATTACGACGAGgaggacgaggaggacgaTAACAACCTCAGGGCGGATCGCGTCGGTTCCATGGACGGAAATTATGGTCGGGGTAAACGGGATAATTCCCAGAAGAAGCACAATAACAAGAAGGAGCTGGAATGTGTAAGTTGCAATAAGAAATGTTGCTCGAAACAGTCGTTGGCTAAACATATGGAGCAGCATGTGAAGGATGAACGAGTGGTTAAATTGGAGAAGCAGAAACAACCGACAGAGAAGAAGGGACAGAGGAACTGTGCCAGCGACGATGTCGATGGGGAGAAGAAAGATGACGATTACGACTCGGATTTCGAGAGCGGATTGGACTGGCCGATGGACAATCACGAGTGTGCTAAATGTAAGAAACGGTACAGTACGAAAAAGTCGTTGCTGCGGCATCAGTTGTTGCACGAGGAGCCAAACTTCGAATGCGACATCTGCAATGTTAAATTCTACCGTAAGGATAAACTGAAGGCTCACTACGACAAATGCTCGGAGAAGAATCCCGATCAAGTAAGGAAGTGCAATATCTGCGGGGACAGTTTCGAGaacaatgaaattctaagGGAGCATAGATCTAAGCACGTTACCGAAGGTATCCTCACGGAGGAGGATCTAAGAGACATAGAACCGCGACCGGAGGAGAAAAAGCCGGGTGAGAAGATCGGCCGGAAGAGAAGAACCGATATCGTCGGTCTGGAATGCACGGAATGTAACAAACAGTACACATCGAGGAAAGGATTGTTGCGTCACATTCAAGTTCACGAGGGGAAGAAATACCTCTGCGACATATGCCCGAAAAAGTTCTACAGAAGGGAACATTTGAAGATACACGTAGCCAAGCATAACATGATCAAACCGTACAAATGCACGCGTTGCACCAAGCGTTTCATTAAAGAGGAACAATTGACTAATCATTTGTCGAAGCACGATCGAACGTTcaagaagaacaaagaaacgGATAGTTCGAAGAGATTTCTTTGCGAGATCTGTTCGAAAAGCTTCACCCAATCGACCACGTTGATCGCTCATCTCAGAGCGCACAATGGTATAAAACCGTACGTTTGCGAGGTTTGTTCTCGACCGTTCACAACGAACGCCTACTTGAAGATGCACATGAGAACGCATACGCAGGAACGGCCGTACATTTGTCAGTACTGTTCGCGGGCATTCGCCAGGGCTGATACGCTTGCCAATCATTTGACCTCGCACACAGGCGAGGCGAAGTATCATTGCAAATACTGTCCGAAGAATTTCCGTCGTCTTAAGTCCTTGAAAGAGCATGTTTTCATTCACACCGGCCAGAGGCCTTACGCTTGTCCGACCTGTGATCGACGTTTCAACAACAACGGCAGTCGCTATGCTCACAGCAAAAGGTGTAAACAGAATTTCGTTCAAAATCAGAATCGCGGTCAGGCGTTGACCACACAACCGCAGTCGATTCAAACTCAACAAAAAGTGTTGCAACAAGCTACGCTTGGACAGTGTCAAGTAGTGAAGGCGCAGAATATTAAGACGATCACTATTACCAGGCAGTCCGAACCGATCACTGCGCAACAAGTGATGCAACACCAGGAGATACTAATGCCTTTGATTCTTCCCCTTACAGTAACCCTCGCCGACGTTGGCGAGGAGGTTATATTACCAGAGggaagtaaaatatttactaCAACTTAA
Protein Sequence: MDAVEINTSDSSQNEEGIVSTVEICRVCLLGNLVMRDLFLENEVDSLSAKAMSFANVKMLPGDGLPSRVCCMCADKLESAYEFKLQVEQADTVLRERFVTMNIKEELFFNEVEVHLDAGERNEGIGEIHIDNHYQNNTGSLAPMSQEEKSSLLKDQLALLQVEKLTENEQAMREQNNGQAMEEVIDQTITTEQTSEDCLNHEEEAVKAIAEAAKGDDEMLKHQSRDNNYIERIPPMEHDYILQQECILSNDGQQEQQEQQQQQQQQLNDSEESFPREDCAEYVNLLVKAADVTSQEDEDEEEQEEPDDAKMDIKIEEHSICQNETRRSKRKLARRSFDAKQNSDEENYFENLNLSSRLKTVEPSDKSDKVFFLCYLCDKEFLSKSVLKEHMHSHEEVRKALSLKKPSETPEKSVCNVAKSPPSGKRSNKCPYCGKQYIYIISYSKHLKKHEREKEEGKEDPMPLEISFHEDEHSLDLEDYEDAQHSNSECRKRAKRKDSFARTKTKKIEDDDDDDDDEDEEHGQDEDEDEEGENREEKGSNSTREEEQENQSMETFPFACDKCSQKFHTKRGLRKHSVSHVVLKCSICEEEFDSMEKLRNHRAKHVVEGVLSEQDFEADTTEYTIEKESGDYGMERKESGERIEDEDGGEAGRVELENGSGKSDRNTETQGHEYSCKACCQRFPRKDLLLKHVEQQHERVKSFKCTQCNKTFGNELTLRNHLIATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEDEEDDNNLRADRVGSMDGNYGRGKRDNSQKKHNNKKELECVSCNKKCCSKQSLAKHMEQHVKDERVVKLEKQKQPTEKKGQRNCASDDVDGEKKDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQALTTQPQSIQTQQKVLQQATLGQCQVVKAQNIKTITITRQSEPITAQQVMQHQEILMPLILPLTVTLADVGEEVILPEGSKIFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01122592;
90% Identity: iTF_01122592;
80% Identity: -