Obic010503.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- -
- Assembly
- GCA_907164935.1
- Location
- NC:773253-785357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0039 0.24 12.3 1.6 1 23 789 811 789 811 0.97 2 11 0.16 9.7 7.3 0.1 1 20 819 838 819 840 0.90 3 11 0.0021 0.13 13.2 2.0 2 23 899 920 898 920 0.96 4 11 1.4e-06 8.8e-05 23.2 1.6 2 23 971 992 970 992 0.97 5 11 0.00011 0.0065 17.3 0.9 1 23 997 1020 997 1020 0.96 6 11 9.4e-05 0.0058 17.5 0.4 1 23 1057 1079 1057 1079 0.97 7 11 2.4e-06 0.00015 22.4 0.9 1 23 1089 1111 1089 1111 0.96 8 11 6.9e-06 0.00042 21.0 1.2 1 23 1117 1139 1117 1139 0.99 9 11 3.5e-05 0.0021 18.8 0.2 1 23 1145 1167 1145 1167 0.98 10 11 0.00026 0.016 16.0 4.6 1 23 1173 1195 1173 1195 0.98 11 11 0.001 0.063 14.2 0.4 1 21 1201 1221 1201 1222 0.94
Sequence Information
- Coding Sequence
- ATGGCCCTCGATGTTACCGAGAAAAGTTATATTCTGGACGCAAGGAGCAACTATGAGGATGTCGGCAGCCTCGGATCAGAGGAATCTTACGATGATATGAGGCAACTTGTCGGGgagaagaaggaagaatcCGGAAAATTCAATAGTCTACCATTGGccagttttaatttcatcaatTCCATTATCGGCAGTGGTGTTATTGGCATACCCTATGCCCTTCACCAGGCTGGATTTGGCCTTGGAATAGTATTGTTAATTTTGGTAGCAGGCCTTACTGATTATTCATTGATTTTAATGGTCAGAAGTGGTCATATTTGTGGAGAAATGAGCTATCAAGGTTTAATGAGGGCCAGTTTTGGTCGCACTGGATTTTACATCCTTACCACTCTGCAGTTCATTTATCCATTCATAGCAATGGTCTCTTACAACGTTGTTGTCGGCGATACGGTAACAAAAGTGTTGATAAGAGTAACAGGAATGAACGAAACGAGTATATTTGCTCATCGTCAAGTGGTCATCTTCTTCGCGACGGTTTGCGTCACCATACCATTGTGTCTTTATAGAAACGTAGCCCGTTTGGCCAAGATCTCTTTCCTTTCGTTGGTCTGCGTCGGTTTCATTCTCTTGACTATCTTAATTCGGATGGGTACGATGTCTGCAATTGTGCCAAGCCAAGAAGAGAGTTGGCGATTTGGAAATTTCCGTGGCATCATTCCTTCAGTTGGAATTATGGCTTTTGCCTTTATGTGCCATCACAATACGTTCCTTATATATGAGTCTATAGAAAGAGCTACTCAACAAAAGTGGGACGTAGTCACCCATTGGTCACTCTTCACCTCGTTCTTAATTGCTGCAGCTTTTGGAATTATTGGCTACGCCACCTTCACCTCCTACGTACAAGGAGATCTTATGGAGAATTATTGCTGGGACGATGATTTGATGAATTTTGCAAGAGTCATGTTTAGTGGGACTATCCTCTTAACTTTTCCCATCGAATGCTTCGTAACTAGAGAAGTAATCCTAACAGCAATCAAAGGCACGGATGAACTTGAAGATCATACCGCATATGTTCCTAATTCGGACAGGAAGTACTTGATGATCACTTTGGCGATAGTAATCGTTGCTTATTTGATCTCCATGTCTACGGATTGTCTGGGAGTGGTCCTAGAATTGAATGGTATCTTAGCAGCAGTACCTTTAGCCTACGTTCTTCCTGGACTGTGCTACCTCAAGCTTGAAGAGGGCCCAGTTCTCTCGTCCAAGAAGCTTCCGGCTCTTGGTTTGATGACCGCTGGTGTGTTCGCTGCTGTTTCTGGATTATTGCTTCTCATTTTGAACAGCGATACTTCTAGTTCCTGTGTACACGGAAAGaattacatACTCAGCTCTCGTTTGTTGGAATTTACGCGTACCTGGATGAAAATTCGTATAAAGTACCTCCTacttatgtatgtacaattgATCAtATGTTTGAATAATGTTATCAATTATACGAATGTATTGGGCAAGAAAAATGTCAAAAACGTCTTCGGTTTCCGTAGAGGGgagttcgagatcattgctTGTTTtctaaatacatatgtatacattaAAATGGAAGTTTCAAAAAGTGAGCATCTACTCGATACCTGTGAACAAATTTACGGGGACGAGTGTAGAATATGTTTAAAAAGAGCCGTTGAAATTTGCGAATTATTTAGAAATGGAGACGCTATTCCTCATAAACTTATGGCCGTTGCTTCTGTACAGGTGGAACAAGGTGATGGTTTACCTCCAGTGATTTGTGTACCTTGTAATCAACGTTTGGATGCATCTTATGACTTTAAATgtcaaatacaaaattcagatgaaaaacttcgtcaatttttaaaattaaaatccgATAATGATTCAATTAGTAGCACCACCATAGTTACAGCAATAATTGCTGATGtgatatctaatgtaatatcttcTGAGAAAGAAAGCTCAGTTAAGCCAGAAATTTGCTCTACAGATTTTTGTTCtgataatttttcttttacaaagGATGATTCTTTTTGCCTTAGTTCAGAAAAGAACTTATTTTGTTATGAAAAGGAATCGCAAAGTCAATTGAATGATAAAGAACAAAAGAAAAGCACAGGAAATGTAGATATTTATACAAGTTTGTTAGAAGAAGATTCTCTAAGGTGCGTTAATTTGGTTAAACAACAAGAATTGCATTTATCGGATACTTGTAAGGTGCAAGACAAGGATACTAcatcaaaaattgaaattagtgaCCAAGTATCTGAAAATCAACAAATGTTAGAAGAGACATTAAAAACAGATGGTGGTACACAAGACGATGAGGAGAAACCTTTAATTGTACGTGCAACTAGATTTCGTTGTACGCAGTGTATTAAGTCATTTCATACAAAAGTGGCCTTGCAAAGACATGCTATTGTACATAAGCGTAAAACTAAATTGCGGTATGTCTGTTATGTTTGTGATAAGCAGTATTCAACTCTTGTGAAAGCAAAAAGTCATGTAGCAATTTGTCGTGAAGCTCATGacaggaaagaaaatattcaagaTAAAAAAATCAGTTACAAGCAAGAACAAGAAGTTGCAAATGTGCAAGATAAAAagtttaataatattcaagataaaagaataaaaattcagaaaaatgataattcttttaaagaacaacgaaaaagtttaaaattgaattgtaAAGTTTGTTCAAAACAATTTACTTATCAAAAGTCGTTTATAACTCATGCTAAAAGTCATCCAGAATATAAGTTACAAGAATTGGATGATTCTTCTCTGTGTTCAACAAAAGAAAAGTCAACAGAAAATCTGGAAGAACAGGaggaagaagatgaagaagaggaTGAAGAAGAGGACGACGAAGACGAGAACCTTCCTGCTGAAAGTCTACAGTGCACTCAATGTGGAAAGTTATTTGCAACAAAGAAAAATCTTAAAAGGCATATTTCTACGCACAGCGGATTAAAATACACTTGCGAGAGGTGTGGTAAAGGATTTTCAAGAATAGACAAATTAAAAGATCACGAACAATCAAAACACAAGTCTGAAGTATTTGAAGACTCTGATTTTTCTGACAAAGAAGATATGGATGATATAAACAGGGGGGATTGTttagaaggaagaaaaaaaGATCGTGACAACAGACCGCACAAGTGTGCAATGTGTCCTAAATCCTTTGCCCAAGCTCAATCTTTAGCGAATCATGTTGAACGTCATAAACGTGTTAAAGAAACCCAGAAAAGGTTTCTTTGCGAGGTTTGCAGTAAATGTTTTGCGCAGAGTGGTTCTCTTGTTGCGCATATGCGTACACATACAGGAGTTAAACCGTATGTTTGCAATGTGTGTAGTAGAGCTTTTACAAAGAGCACTTATTTACAACTGCATTTACGTACACATAGCGGGGAGAAACCGTATATTTGTCAATATTGTAGTAGAGCTTTTGCGCGTGCAAATACATTGGCACGGCACATTACCATGCACACAGGAGAAGCGAAGTATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACCTCATTGAACGAACACACTTATACGCATACTGGTCAACGACCATACGCCTGCAAAATTTGTACAAAGAGATATAATAATGCTGGATCGCTTTACGCGCATAGAAAAAAGTGTAAAGCACAGCAGTTATCTAATAGTGGATTTACAGTTTCTGTAGAAAACTCGATATCGCACCAAGATATAAACGTTCCACAGGTTTTGATTTATTCACAGCGAAAATTAGTAGAAGACGCAACGGTTGGACAGGTTACACCCACGCCTCAGTACATGATTCCAAATGTACATAATCAAAAGAGTTTGGGATCAAATATTATTCAACCATTTACGATGGAAGATCCAAATGTTTATACAATTAATtcaaaacaatttaaaaaccCCTATTATACGATATATCCAAATATGTAA
- Protein Sequence
- MALDVTEKSYILDARSNYEDVGSLGSEESYDDMRQLVGEKKEESGKFNSLPLASFNFINSIIGSGVIGIPYALHQAGFGLGIVLLILVAGLTDYSLILMVRSGHICGEMSYQGLMRASFGRTGFYILTTLQFIYPFIAMVSYNVVVGDTVTKVLIRVTGMNETSIFAHRQVVIFFATVCVTIPLCLYRNVARLAKISFLSLVCVGFILLTILIRMGTMSAIVPSQEESWRFGNFRGIIPSVGIMAFAFMCHHNTFLIYESIERATQQKWDVVTHWSLFTSFLIAAAFGIIGYATFTSYVQGDLMENYCWDDDLMNFARVMFSGTILLTFPIECFVTREVILTAIKGTDELEDHTAYVPNSDRKYLMITLAIVIVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEEGPVLSSKKLPALGLMTAGVFAAVSGLLLLILNSDTSSSCVHGKNYILSSRLLEFTRTWMKIRIKYLLLMYVQLIICLNNVINYTNVLGKKNVKNVFGFRRGEFEIIACFLNTYVYIKMEVSKSEHLLDTCEQIYGDECRICLKRAVEICELFRNGDAIPHKLMAVASVQVEQGDGLPPVICVPCNQRLDASYDFKCQIQNSDEKLRQFLKLKSDNDSISSTTIVTAIIADVISNVISSEKESSVKPEICSTDFCSDNFSFTKDDSFCLSSEKNLFCYEKESQSQLNDKEQKKSTGNVDIYTSLLEEDSLRCVNLVKQQELHLSDTCKVQDKDTTSKIEISDQVSENQQMLEETLKTDGGTQDDEEKPLIVRATRFRCTQCIKSFHTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLVKAKSHVAICREAHDRKENIQDKKISYKQEQEVANVQDKKFNNIQDKRIKIQKNDNSFKEQRKSLKLNCKVCSKQFTYQKSFITHAKSHPEYKLQELDDSSLCSTKEKSTENLEEQEEEDEEEDEEEDDEDENLPAESLQCTQCGKLFATKKNLKRHISTHSGLKYTCERCGKGFSRIDKLKDHEQSKHKSEVFEDSDFSDKEDMDDINRGDCLEGRKKDRDNRPHKCAMCPKSFAQAQSLANHVERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNSGFTVSVENSISHQDINVPQVLIYSQRKLVEDATVGQVTPTPQYMIPNVHNQKSLGSNIIQPFTMEDPNVYTINSKQFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -