Obic001849.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- -
- Assembly
- GCA_907164935.1
- Location
- NC:188334-191245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.7e-05 0.0035 18.1 5.1 1 23 256 278 256 279 0.96 2 12 0.031 1.9 9.5 6.5 1 23 283 305 283 305 0.97 3 12 0.0021 0.13 13.2 1.4 3 23 316 336 315 336 0.98 4 12 5.4e-06 0.00033 21.3 3.3 1 23 430 452 430 452 0.98 5 12 0.0034 0.21 12.6 1.4 1 23 457 481 457 481 0.90 6 12 2.4e-06 0.00015 22.5 1.4 1 23 520 543 520 543 0.96 7 12 2.3e-06 0.00014 22.5 1.7 1 23 575 597 575 597 0.98 8 12 0.00028 0.017 15.9 4.0 1 23 611 633 611 633 0.96 9 12 1.7e-05 0.001 19.8 1.7 1 23 639 661 639 661 0.98 10 12 0.0024 0.15 13.0 3.2 1 23 667 689 667 689 0.98 11 12 8.1e-05 0.005 17.7 6.5 1 23 695 717 695 717 0.98 12 12 0.00037 0.023 15.6 0.3 1 21 723 743 723 744 0.93
Sequence Information
- Coding Sequence
- ATGGAGATTGATAATTGTAAAGGAATACTTGTATCAGAAAACAATAGCAATGTTTGCCGCGTTTGTCTTGCAACAAATCAAAATAACCAACGCATTTTCGACATTAAACAAAGtaattcaaataatataaagataattaatttgttaGAGAAACTTCGTTTGTGCAGTGGTGTGGAGATATTGGAAAACGATGGTTTACCTAATACTGTTTGCATgaaatgtataataaaaattaatgatgCTCATGAATTAAGAAAACAATGTCAGCAATCTGATACTCAATTACGAGAATtatatggaaaatttaaaaaagaatatgaTATCGATAGATGTAAGATTACTAAAGATAAGTGGTGCCAAACAGATTATTCTATTGCTTTTGATTTTGTTAAAGATGAAAGTTGTACATCTGCGATAGATCATGATTCTTCGTCAACTTTAAATCTGAGTTCAAATGTCAAACCTaccgaagaaaataaaataaataacgaaTCGAACCGTGTAAAACAGgatgaatttaataattgcTTAAATAAACAAAGTACTTGTGTTAAATCAAAAGCAGAATCTGAAAAACATGTCACCGGGAGGGATGCTTACCGAACAAGGAGAATGACAATGTTTAAAAGAGTGACAtctatagaaaatttaaaaaatcataagGAAAGACAAAGGCAATACATAAAAAAGAACGCAAACTTAAAATGGGATACTTCAGAAAATGATCATCCAACGAATGCTATAGATGCAAGTTCGCTAAAGTTATATGTTTGTACTAAATGCGGTAGACATTATTCTAGTAAAAAATCGTTAGATAGACACTTAATAACTCATCATGAGAAAACATTCACATGTAATAAATGTAACAAACACTTTTTTCATTTAGACAAATTAGTAGAACATAGCAAATTGCATGAGATAAAAGAGAAACCTAAACCAGTATTATGTaggatatgtaataaaaactTTAGAAAAACTGATACTATGGTAAGACATTTAAATGTTCATAAAAGAGCTAATCCAAAAGAAGTTCTTTCTATTCTAAAAGAGATCAGAGACAGAAGAAAATTAGAGAGTATCAGTGAATCCGAGAAAACAGTTATTcaagttaaaaataatgatgaTAAAAAGGAAACAGACGAAAAGTCCGTGTTTAGGTATAATAGTATGATTTCAGACAAACGAGAAACTTTCACATCACAGACTGATTGTAAAAGTCCTACTTCTGCCTTATTATTTTTAGATGTAAATGCTAGTGAAAATGATTCTTTTGATAATAATATGGTTTATAAATGTAAGTACTGTACTAAACGTTATACAACCGAGAAATCACTTCAAAGACATTTACTCGTTCATGCCGACAAAAAATTTGTTTGTAACGtatgtaatatgaaattttatcgtGAAGATAGATTACAAAGTCATAAAAATCGATATGGTcatgatgaaaataaaatatctccTGAAGTACAAAAACCGTCTGATGAGAAATCgactattaaattaataaacagCTGGATACGAGAAGAGCTCGACTCGGACAATGAAGAAAAAGGCTTTCCTTGTAAAATTTGTGGAAAATCGTATGACACAAAAAAGTCATTATCAAAACATCAACTAAGTACACACAATTCAGAAGAAGAAGGTTGTGCATCCTGTGGTGAAATGTGTAATTGCGATGAAAAAGGTAAAGAACAGAAAGCAAATGAGGGATTAAAACCATATAAATGCAGTGAATGTAATAAATCCTTCGACAAGGAAGATAAACTGCAAAAGCATATAATGAATCACGAACGCCCTAAAGAGCAGCAAGACGTGGATTTCAAACGatttttatgtcatatatgtAGTAAGACCTTTAGACAAAATACAGGTCTTATGTTTCATATGAGAACGCATACCGGCTATAAACCTCACGTTTGTAAGTACTGCGGAAGAGGTTTTGCATCGAATTCAAATCGGATCAATCACGAAAGAACTCATACAGGTGACAGACCATTTGTCTGTCATTTTTGCAGTGCTGCTTTTGCTAAATCCTGTACTCTTAAAGCACATATTACAACTCATACTGGAGAAGCAAATTATCATTGCAAAACTTGTGGGAAGTCATTTAGGCGATTAAAATACTTGAAGGAGCATAGATTTACTCATACAGGAGAAAAACCATATGCGTGTAAGATCTGCGGAACGGCGTATAGTCATTCTGGAAGTTTATTCGTACATGAGAAAAAATGTAAAGCACAGTTTAATAGCTACCAGTCTAATTCCGCTCAAAATACGGAATCTTATTGTCACTCTGAAACATCTTCGCCAAGTGTAACTCCTATCATTACAATTTTACCTGAAGTTCATTTGAATGTTTCTGATGAGCTGAACACAGAACATAGCAAAACTTACATAGATAATAATCAGATGATAACTTCTCAGAATATCAACAATTTAAATACTGATAATCCATCTGATCTGCATGATCATTCAAATTCGGATAGTCCTGATGTTTCTTTAACTATTAAAAGTTTCGCCTTGATCAGGCAAATGTTTCAATCGTAA
- Protein Sequence
- MEIDNCKGILVSENNSNVCRVCLATNQNNQRIFDIKQSNSNNIKIINLLEKLRLCSGVEILENDGLPNTVCMKCIIKINDAHELRKQCQQSDTQLRELYGKFKKEYDIDRCKITKDKWCQTDYSIAFDFVKDESCTSAIDHDSSSTLNLSSNVKPTEENKINNESNRVKQDEFNNCLNKQSTCVKSKAESEKHVTGRDAYRTRRMTMFKRVTSIENLKNHKERQRQYIKKNANLKWDTSENDHPTNAIDASSLKLYVCTKCGRHYSSKKSLDRHLITHHEKTFTCNKCNKHFFHLDKLVEHSKLHEIKEKPKPVLCRICNKNFRKTDTMVRHLNVHKRANPKEVLSILKEIRDRRKLESISESEKTVIQVKNNDDKKETDEKSVFRYNSMISDKRETFTSQTDCKSPTSALLFLDVNASENDSFDNNMVYKCKYCTKRYTTEKSLQRHLLVHADKKFVCNVCNMKFYREDRLQSHKNRYGHDENKISPEVQKPSDEKSTIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLSKHQLSTHNSEEEGCASCGEMCNCDEKGKEQKANEGLKPYKCSECNKSFDKEDKLQKHIMNHERPKEQQDVDFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFASNSNRINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQFNSYQSNSAQNTESYCHSETSSPSVTPIITILPEVHLNVSDELNTEHSKTYIDNNQMITSQNINNLNTDNPSDLHDHSNSDSPDVSLTIKSFALIRQMFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123208;
- 90% Identity
- iTF_01123208;
- 80% Identity
- -