Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:6599814-6604606[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.013 0.78 10.7 0.1 1 23 285 307 285 307 0.95

2 12 2.6e-05 0.0016 19.2 1.2 1 23 315 337 315 337 0.98

3 12 1e-05 0.00064 20.4 0.2 2 23 345 366 344 366 0.97

4 12 6.3e-06 0.00039 21.1 0.6 1 23 372 394 372 394 0.98

5 12 4.1e-05 0.0025 18.6 2.0 1 23 401 423 401 423 0.99

6 12 7.7e-06 0.00047 20.9 0.6 1 23 429 451 429 451 0.96

7 12 2e-05 0.0012 19.6 0.1 1 23 457 479 457 479 0.98

8 12 1.1e-06 6.7e-05 23.5 1.2 1 23 485 508 485 508 0.96

9 12 5.7e-06 0.00035 21.3 0.5 1 23 514 537 514 537 0.96

10 12 2.7e-06 0.00017 22.3 2.1 1 23 543 565 543 565 0.99

11 12 0.00014 0.0087 16.9 0.4 1 23 571 593 571 593 0.94

12 12 0.00044 0.027 15.3 0.1 1 23 599 623 599 623 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.013	0.78	10.7	0.1	1	23	285	307	285	307	0.95
2	12	2.6e-05	0.0016	19.2	1.2	1	23	315	337	315	337	0.98
3	12	1e-05	0.00064	20.4	0.2	2	23	345	366	344	366	0.97
4	12	6.3e-06	0.00039	21.1	0.6	1	23	372	394	372	394	0.98
5	12	4.1e-05	0.0025	18.6	2.0	1	23	401	423	401	423	0.99
6	12	7.7e-06	0.00047	20.9	0.6	1	23	429	451	429	451	0.96
7	12	2e-05	0.0012	19.6	0.1	1	23	457	479	457	479	0.98
8	12	1.1e-06	6.7e-05	23.5	1.2	1	23	485	508	485	508	0.96
9	12	5.7e-06	0.00035	21.3	0.5	1	23	514	537	514	537	0.96
10	12	2.7e-06	0.00017	22.3	2.1	1	23	543	565	543	565	0.99
11	12	0.00014	0.0087	16.9	0.4	1	23	571	593	571	593	0.94
12	12	0.00044	0.027	15.3	0.1	1	23	599	623	599	623	0.94

Sequence Information

Coding Sequence: ATGCAAATGTTACCATTTACACATAAATTGATTAACATTTTAGATGTTAATTTAACGAAAATCATCAGAGTAATTCTGGAATTCAGTATTAGAACTGTTTTAGTATACTTTCTATTTGCCAAAAAGATGACGGCTGATTCAGAGAAAGATATTATTCATTGCTTAATATGCAATAGTAAAGTTGGTGTGTCTACTAGGAATAGTATAcgtatttttaatgaaaactcTGTAACATCATCAGAGAAACCACTTATAGATACAATATGTACTGTTTTGGAGACAGATTTAAATGAGGAGAATGTTCATTCTCTTGTTATAtgtaaaaaatgttataaattattcaatgaGGTTGATGAACTTGAAAACCGATTGACAGAGGTAAAAGTAgaactttttaataattataagaaGACTATGAAAAAGATATCTGATATTCAAAATGAAGAAGAGTACAATGATCATGATTAcatagaaaatatagaaaatacagaaaatacAGAAAGTCAGGGTACAGAtgtagaaatgaaatatgcaCAAAGGGATGAAGAAGAAATGCAGGAGTCTGAGGGTGAAATAGAAAgattagaagaagaagaagaagaagatccTACCTGTGAACCAGCTGAAATTATTCTTAAAGTTGAACAAGTAGCTGAAACAAGTAAtaatgaagaaagaaagaggataaAAAGGTCAAAAGTTTCAACAAAAGTTGAAATCCCTCAAGAACAgCTGGTGACCAGAGATGGTTCAATATATACCTGTTTATTATGTACAAACGAAGATGATAAAGCTGTAGGAGACGCAAAATCAATTATCGCACACATGAAAAGTGTACACGAAACTCGTTTATACATCTGCGACATATGCGGggatgattttaaaaaaagaaacgaactATCTGTTCACCTTGATGATCACGTTGCAAGGGAGGAGGGAGATTTTCAGTGTGAGATATGTAACAGAATATTTAGTAATTTGCGGTTGTTCAGAATTCATAAACGGATACATTATCCCCAAGTGAAATCATGGCCATGTGAAACGTGCGGTAAACGATATAGtTCCAGGAATTTATTGGAGGAACATATCAATACCCATACAGGTGTTCGCCCGTACGCGTGCGAGAACTGTGGAAAAGATTTTGCttcaaaatatacatataaagcaCATGTAAAAACACACGAAGTACGACCTCGTCCATACGAGTGTTCCCAGTGTAATAAAACATTCTTGAGTCAACAAAATCTTAATCAACACGAAAGAACTCATAATGGCGTGAAGGAATATGTTTGTCATCAGTGCGGAAAAGCATTTGGTTCACCGCACAATCTGGAAGTGCACAATATAGTGCATACAGGCTACAAACCGTATATATGTAGGGTATGCGGTAAAGCGTTTGCACGCAAAGCTGAAATAAGAGATCACGAGAGGACGCACACTGGAGAGAAACCATATCAGTGTGAATTTTGTGGAGCCACATTTAGtcAAAGATCAAACTTACAATCGCATAAACGCGCAACGCATTACAATGATAAACGGTATAAATGTGACGATTGCGGGAAAGGATTTAAGCGACGAAGGCTGTTGGATTATCATATAAAAGCAGCTCATACTGGCGAAAGGCCATATAAATGCGACGAATGTTCAGCGACGTTCGTTTATCCTGAACATTTCAAAAAGCATATGCGCATACATACCGGAGAGAAACCGTATTTGTGTGAGGTTTGTGGTAAAGCATTTAATAGCAGAGACAATCGGAATGCGCATCGATTCATACACAGCGATAAAAAACCATATGAATGTTTAGTATGCGGTATGGGTTTCATGAGAAAACCATTGTTATACGCTCACATGCAAACTCAAGGTCATTTGAATGATACTATTGTAGTTAATCAACCCCGGCTTACTACAGAAGAAGATCAAGTCATGGCGCTTCCTGACGGTAACGTGGAACTTTTAATGGACGAAGCAGAAAACGATCAGttGGAGGAAACTGAATTGTACGTGACTGAATTAAAAGATCATGTAATTATACAAGAACAAAATGACGACCAGATATATAACGAAGaagatgtattaaatatccCAGCGGAAGAAACCGTAGACGAAGAAGTGAATCATCTCGTTGATGGAGAGATGACCTTTACTGAACCCGAGGAGATGGAGTGTAAAGTCGAGGAGACGGAACACGTGGAAGAAGTGTATACTTATAATGAAACTGAGGACGGTGAAACAATAGTTGTACCAGCTAGCTCAGAGTACAAAGAAGTAGTAGACGACAAGAACGCGGTTCGGTTAGTTCAAATTCGGTTTCCAACATCGGTGGGCGGTGAAGGTCGAAGTTGGTTAAGCTTAGTACCAAACACATGA
Protein Sequence: MQMLPFTHKLINILDVNLTKIIRVILEFSIRTVLVYFLFAKKMTADSEKDIIHCLICNSKVGVSTRNSIRIFNENSVTSSEKPLIDTICTVLETDLNEENVHSLVICKKCYKLFNEVDELENRLTEVKVELFNNYKKTMKKISDIQNEEEYNDHDYIENIENTENTESQGTDVEMKYAQRDEEEMQESEGEIERLEEEEEEDPTCEPAEIILKVEQVAETSNNEERKRIKRSKVSTKVEIPQEQLVTRDGSIYTCLLCTNEDDKAVGDAKSIIAHMKSVHETRLYICDICGDDFKKRNELSVHLDDHVAREEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYACENCGKDFASKYTYKAHVKTHEVRPRPYECSQCNKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCDECSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEDQVMALPDGNVELLMDEAENDQLEETELYVTELKDHVIIQEQNDDQIYNEEDVLNIPAEETVDEEVNHLVDGEMTFTEPEEMECKVEETEHVEEVYTYNETEDGETIVVPASSEYKEVVDDKNAVRLVQIRFPTSVGGEGRSWLSLVPNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_01123198;
80% Identity: -