Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:5386504-5392553[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.008 0.49 11.4 3.3 1 23 78 100 78 100 0.97

2 27 0.55 34 5.6 6.9 1 19 102 120 102 125 0.90

3 27 0.095 5.9 8.0 1.2 1 23 130 155 130 155 0.91

4 27 0.00041 0.025 15.4 2.0 2 23 162 184 161 184 0.95

5 27 0.006 0.37 11.8 2.8 1 23 189 211 189 211 0.98

6 27 4.5e-05 0.0028 18.5 0.9 2 23 218 239 218 239 0.97

7 27 2.5e-05 0.0016 19.2 0.6 1 23 245 267 245 267 0.98

8 27 5.3e-06 0.00033 21.4 0.3 1 23 273 295 273 295 0.98

9 27 4.9 3e+02 2.6 7.4 1 23 335 358 335 358 0.92

10 27 9.3e-06 0.00057 20.6 0.3 1 23 364 386 364 386 0.97

11 27 6.7e-05 0.0041 17.9 1.5 1 23 392 414 392 414 0.97

12 27 0.0075 0.46 11.5 0.9 1 23 420 442 420 442 0.98

13 27 7.8e-06 0.00048 20.8 5.2 1 23 448 471 448 471 0.98

14 27 0.0012 0.076 13.9 2.2 1 23 486 509 486 509 0.96

15 27 0.029 1.8 9.6 0.6 3 23 519 539 517 539 0.95

16 27 4.1e-06 0.00025 21.7 0.8 2 23 546 567 546 567 0.98

17 27 0.00061 0.037 14.9 1.4 1 20 573 592 573 594 0.92

18 27 0.4 25 6.0 0.5 3 23 630 651 629 651 0.96

19 27 7.2e-05 0.0044 17.8 1.1 1 23 657 680 657 680 0.97

20 27 2.7 1.7e+02 3.4 0.8 2 23 686 707 685 708 0.93

21 27 5.2e-05 0.0032 18.3 0.6 1 23 713 735 713 735 0.98

22 27 0.041 2.5 9.1 0.3 2 23 742 764 741 764 0.94

23 27 0.00018 0.011 16.6 2.1 1 23 785 808 785 808 0.93

24 27 0.0058 0.36 11.8 0.1 1 23 819 841 819 841 0.95

25 27 0.023 1.4 10.0 3.6 1 23 847 869 847 869 0.94

26 27 1.4e-06 8.5e-05 23.2 1.1 1 23 875 897 875 897 0.98

27 27 0.00043 0.026 15.4 0.4 1 21 903 923 903 924 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.008	0.49	11.4	3.3	1	23	78	100	78	100	0.97
2	27	0.55	34	5.6	6.9	1	19	102	120	102	125	0.90
3	27	0.095	5.9	8.0	1.2	1	23	130	155	130	155	0.91
4	27	0.00041	0.025	15.4	2.0	2	23	162	184	161	184	0.95
5	27	0.006	0.37	11.8	2.8	1	23	189	211	189	211	0.98
6	27	4.5e-05	0.0028	18.5	0.9	2	23	218	239	218	239	0.97
7	27	2.5e-05	0.0016	19.2	0.6	1	23	245	267	245	267	0.98
8	27	5.3e-06	0.00033	21.4	0.3	1	23	273	295	273	295	0.98
9	27	4.9	3e+02	2.6	7.4	1	23	335	358	335	358	0.92
10	27	9.3e-06	0.00057	20.6	0.3	1	23	364	386	364	386	0.97
11	27	6.7e-05	0.0041	17.9	1.5	1	23	392	414	392	414	0.97
12	27	0.0075	0.46	11.5	0.9	1	23	420	442	420	442	0.98
13	27	7.8e-06	0.00048	20.8	5.2	1	23	448	471	448	471	0.98
14	27	0.0012	0.076	13.9	2.2	1	23	486	509	486	509	0.96
15	27	0.029	1.8	9.6	0.6	3	23	519	539	517	539	0.95
16	27	4.1e-06	0.00025	21.7	0.8	2	23	546	567	546	567	0.98
17	27	0.00061	0.037	14.9	1.4	1	20	573	592	573	594	0.92
18	27	0.4	25	6.0	0.5	3	23	630	651	629	651	0.96
19	27	7.2e-05	0.0044	17.8	1.1	1	23	657	680	657	680	0.97
20	27	2.7	1.7e+02	3.4	0.8	2	23	686	707	685	708	0.93
21	27	5.2e-05	0.0032	18.3	0.6	1	23	713	735	713	735	0.98
22	27	0.041	2.5	9.1	0.3	2	23	742	764	741	764	0.94
23	27	0.00018	0.011	16.6	2.1	1	23	785	808	785	808	0.93
24	27	0.0058	0.36	11.8	0.1	1	23	819	841	819	841	0.95
25	27	0.023	1.4	10.0	3.6	1	23	847	869	847	869	0.94
26	27	1.4e-06	8.5e-05	23.2	1.1	1	23	875	897	875	897	0.98
27	27	0.00043	0.026	15.4	0.4	1	21	903	923	903	924	0.96

Sequence Information

Coding Sequence: ATGACTGTGAATGGTCCATCTACTAATGAACCTCCAAACCCCTTTACTTCTGAAGAGGACAGCATACAAGAACCATGCAGCATAAAAATTGTCCAGGTCTACAGCTTACAATCAATAAAAAAGGAATCACCAATCAAGCTGGAAAATACAAAGACTCAATATAAAAGAAACTATTCAGAAGTCTTTACCGACATAGAAAAGCCAGAGAAGAATAAAATTCCTCGACAAATATTTGAATGCAATTATTGCAGCCAACAATTTGACCGAAAATGTTTAATAGAAAGTCACATGAAAGACCACAAACACCAATGCAGTTACTGCACTGCGACCTTTAAATTTCTTCAACAATTGAAGCAGCATTGCAACCAAAAACATGGTTGCAAGTCGTTTCCATGCACTATGTGTGGTTGTGAGAAGCAGTACAAATTCATGGCTGATTTATATCGGCATACAATTATGGTGCACAACGGTGTTCCTCCACTGAAATGCGTCATATGTAATCGTACTTCCAGAAGTCTATCTGCCCTGAAGGCACATATGAAACATAAACATTATAAAACTGCGTACGTATGCCACATATGCAAACGTTGCATGACGAGCGAGAGGAACCTGGCACTGCATTTGCAGTGGCataaaaggagagaaaaagcAACGTGTCCTACTTGTGGAAAGATACTCAAGCATAAATGGAACTTGCTTGCTCATCTGAGGCTTCATCAGGGTATCAAGCCCTATTCTTGCCCACTTTGTAGTAAAACTTTCTCAAAAAAGGCATCTATGCAACAGCATGTATTGATTCATACTGGAAAGAAAGTATATTCCTGTGGTATATGTGGAAGTACATTTGCTCAACAGTCAGGGCTGCGTGCACACAGGAAGAAACATCCTGGTCCTCTACCACCGATTCCTGTCGTGGCCGTTAAGAACATTGTTGCTGAATTCATTCAAGTACTTCATCAAAATCTCTATTTCAGGTCACGAAGAGTAGCATCACGCGCGATTCACGAATGCATCAAATGCGGAGCTTGTTTTTGTCACACGAGGAAGCTAGTGGAACATCTGAAGAACCTCCATGGCATCGACAGAGCGTTCAGCTGTGACGAATGCGGTAAAACCTTCAGAAGTCCCATGAACATCGCCCGTCATAAGCTAATCCACATGGGTTCCAAAAGATTCGCCTGTGACTTGTGTGACTATAAATCAAATCAGAAATCAAATTTGGAAAGTCATCGACGTCGACACACGAAGGATTACGCTTTCAAATGCGACCAATGTAACAAAGGATTTTTCTTAAGAACAGAATACTTGGAACACGTGAACGTCCATACCAGAAAACAATTGTATCACTGCGAACATTGCGGCAAATCGTATCCTTATAAAAGGAACCTGATGACCCACCTGAGGACCCAACACCCCTATCTCACATGCGTTCAATCTTCCAGTGATAACTTGAAACATGTATGCAACATTTGTCTGGAGAATTTTGCAAGAAAATTATCGTTGAAGAGGCATCTGAAGCAGCGACACGGGTTACAAGAGAAAAAGAATCATTTGTGTGATCTATGTGGGGCAGTGTTGTCCTCGAAGAGGAGGCTAATGGTCCACAGACGAGGGCACACCAACGAAAAGGTCGCCAAGTGTGATTTATGCGATAAAACGTTTTCTAGTAAGGAGAATCTTGGTATTCACCGACGTGTTCACACCGGTGAAAAACCTCACGCCTGTAGTCAGTGCGGTAGGAGGTTCACACAACGGACGTCTTTGATCTTGCATCTTAGCCACTGGACCAACAAACAAGACGAGATTGCCAACTGCGAAGATTTCCAAATAAAAAACGAAGACGTTCTTCTAGATCCAGGGCAGAAattTGAGGGAAACGAGAAGATCTGTGATCTTTGCCAAGAAAAATTCCACTTTGTGACGAGATTAGTGGCCCACTTGAGGATCGTTCACGGTATCCATAGACCCTTTAAATGTGTCACCTGTGACAAGACATATCCTCAGCAATTCATGCTAAACGCTCATGTGAAAAAATCTCACACACCAAAAACCATACCCTGTACGCAATGCAGTTTCATGGGAGTGAATACCATCGATGTGGAGAGACATACGAAGCGACACCATAGCGAGGTTAAATTCACCTGCGAGATTTGCAGTGAGAATTTTACTGATAAGGATTCTTTGGTGACGCATACGACGATGCACAATTTTATGCAGTTTCAACAGTGCAACGCTTGCGGTAGCACCTTTGATGACGTATACAGTTTGAAGGAACACAATCGTCTGTACCATTACGACCCCGCGGGATCCATACAAGAGAAGCTGGAAGATGGGGATCAACATGGATCCGAGCACAAATGCGACGTTTGTGGGAAGGTTTACAAATATAAATCAGTATTAAAACAGCACAAGGTGAAAGCACACGGTGATACTCCTAATTATGAAAGACGTCGGTATTTATGCGCCCTTTGCGGCAAGGAACTGAAAACCGCCAAGGGATTGGAAATTCACAATCGTTCGCACACAGGTGAAAAACCATATACTTGTGAAGTGTGTGGAAAGTGCTTCGCCTGTGAAACATTATTAAGGACTCACAATGTGACACACACAGGGGAGAGAAAGTATTCTTGTGATCAGTGTGGTAAAGCATTCACACAGAGGTCCACGTTGGTGGTCCACAAACGTTATCACACAGGTGAACGACCGTATGTTTGCACACAGTGTAGCAAAGGCTTTGTGACTAGGACAGTTTTGAATACTCATATGAAATCCTGCCGCTGA
Protein Sequence: MTVNGPSTNEPPNPFTSEEDSIQEPCSIKIVQVYSLQSIKKESPIKLENTKTQYKRNYSEVFTDIEKPEKNKIPRQIFECNYCSQQFDRKCLIESHMKDHKHQCSYCTATFKFLQQLKQHCNQKHGCKSFPCTMCGCEKQYKFMADLYRHTIMVHNGVPPLKCVICNRTSRSLSALKAHMKHKHYKTAYVCHICKRCMTSERNLALHLQWHKRREKATCPTCGKILKHKWNLLAHLRLHQGIKPYSCPLCSKTFSKKASMQQHVLIHTGKKVYSCGICGSTFAQQSGLRAHRKKHPGPLPPIPVVAVKNIVAEFIQVLHQNLYFRSRRVASRAIHECIKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHMGSKRFACDLCDYKSNQKSNLESHRRRHTKDYAFKCDQCNKGFFLRTEYLEHVNVHTRKQLYHCEHCGKSYPYKRNLMTHLRTQHPYLTCVQSSSDNLKHVCNICLENFARKLSLKRHLKQRHGLQEKKNHLCDLCGAVLSSKRRLMVHRRGHTNEKVAKCDLCDKTFSSKENLGIHRRVHTGEKPHACSQCGRRFTQRTSLILHLSHWTNKQDEIANCEDFQIKNEDVLLDPGQKFEGNEKICDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCDKTYPQQFMLNAHVKKSHTPKTIPCTQCSFMGVNTIDVERHTKRHHSEVKFTCEICSENFTDKDSLVTHTTMHNFMQFQQCNACGSTFDDVYSLKEHNRLYHYDPAGSIQEKLEDGDQHGSEHKCDVCGKVYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCTQCSKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -