Osur015184.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- L
- Assembly
- GCA_004796505.1
- Location
- SSSI01010010.1:6257-11355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0027 0.26 11.9 0.3 1 23 77 99 77 99 0.97 2 16 0.17 17 6.2 5.3 1 23 105 127 105 127 0.97 3 16 0.94 90 3.9 2.5 1 23 133 160 133 160 0.66 4 16 8.4e-06 0.0008 19.8 0.8 1 23 182 205 182 205 0.96 5 16 0.22 21 5.9 0.7 3 23 238 259 236 259 0.93 6 16 0.023 2.2 8.9 4.2 1 23 283 306 283 306 0.96 7 16 0.58 56 4.5 0.6 3 23 399 419 398 419 0.94 8 16 0.019 1.8 9.2 8.7 1 23 428 451 428 451 0.92 9 16 0.00024 0.023 15.2 1.4 1 23 456 479 456 479 0.96 10 16 2.9 2.8e+02 2.3 2.7 1 23 486 510 486 510 0.93 11 16 0.054 5.2 7.8 3.8 1 23 546 569 546 569 0.86 12 16 0.046 4.4 8.0 6.4 2 23 611 632 610 633 0.94 13 16 0.003 0.29 11.7 0.2 1 23 641 663 641 663 0.97 14 16 0.0044 0.42 11.2 3.7 2 23 798 819 798 819 0.96 15 16 0.00051 0.049 14.2 0.1 1 23 827 849 827 849 0.97 16 16 0.033 3.2 8.5 0.7 1 23 856 878 856 878 0.97
Sequence Information
- Coding Sequence
- atgaaaatgttatttaaaggAAATAGCAGTCGTTTGGAactattaatagaaaaaatacaatcaaCTAGAGAAACAACTGATGTTAAAGAAATTGATTCAATACCAGGATCATCTAAAGATCAAAATATACCTGGACCATCGCATACGCACACCTCAGTTGAAAGTAGCTTAACATCCGAAACTGAAGACTGCAGTCTTCACATTGACGATTTAAATGATGAcacaatattttcttgtaCAGTTTGCAATGAGAATTTTACAAAAGGAAAAGATTTACTTGAACATGAacaaaTACATTCAGATAATTTACAGTTTAGTTGTTTGTATTGTCCGagattatttaaacataaaagaTCTCGTGACCGACACACAAAATTACATACTGgtgataaaaaatacaaatgtttGCACTGCGAATCCGCATTTTCGCGAAGGGGATATAATACAGCTACAGCTTTGTCTTCGCATcaacaaaatcatttaaaaaaagaatgcAAATCAGATAGTCCGACAAGTGAAGATACAACAGATACATCTGATTTGTTTCGTTGTAATTTGTGTACAACAACGTTTAATAAACAGGATCAATTACAGAATCATATAATTATCGAACATAGTAATACGAATTCACCAACAGGAAGCCAATCATCGTCATCTGatcataatattaattcagATAGTCAAATATGTGGTGAAGATTTAAAGACAATATGCGTATATTGTTCAAAAGAGTTCCATACAATCGAAACAATGTACGAACATATAAATGAAACACATAACAATCATAAGAGAACCGATGATTTATTATCACCGAAATTAGAAAAGTGCGATAATGATTTGAATCCGTTTCAATGTGATCGTTGTTCGATGGAGTTTGAGAAATTTGATCATTTACAAGAGCATTTATGCAATGAACATTGGCGTCCGTttgtatttaacaaaaatgaacaaaatttacCGTACAATTTATCAAATGAATATAATAGTGCAACTGATTtaagtaaaaagaaaaaatatgatgACAATAACGACAACAAATCATTAAAACGGCATAAAACGAATCATGCAATTGTTGATACGAACGATAAGCCGTTTATTTGCTCTTGTTGTTACGTTCAATTaccaaattttaaaagttttttactaCATATGGAAACACATATGGCCAATACGAACAATCTGTTTCTTGgattttgtgtattttgtgGTGAATCGAATCGTGATCAAATCTCATTTACAAATCACATGTTTGGACATGTTATATCCCAATTACCGGAacattattgttgttgtatatGTGAGAAAACGTTCGATCATTGCGATAAATtgcaaaaacatttaattgacGAACACGTTCTAACTGTATACAAATGTAATATATGCAATGAAACATTCGACACTAAATTACTAATGAagttgcatttaaataataaacattcaaATGAATGCcaacattttaaatgtcaTTTATGTAACGATCAAGTATTCCATAATAAACTTTCAGCTGAAATTCATATATCTATGAAACATTATCACCAATTCGCTTCTTGTATAATTAGCAATCAATCATTGTTGCAAAAAGCTCATCATCATCAAGACGATTTCGAATCGAGCACTAAATTATatggtatattatttaattgcaaCTATTGTACGAAATCGTTTAACGACCAATTTTCACATTatatgcatttaattaaagagCATAGCAACAACAGCAAAGAGAAACagACAACTAATACGGCCTCACCGTCCCCGAAAACGGATTCTTGTATCCTAACGTCGCCTCAagagaaaatacaaaaaaccACAAAAGGATTGGTAAGTTTGCAATGTGCATATTGTTACGAATATTGTAAATCAAAGCACGATTTACaattgcatataaaaaatCATCACGTTAATTgtggtaaaataaaacacaaatgcAATATATGCGATGAAATTTATGGTTCGGCAATTAGTTTAGCTGATCATAAATTGaaacattgtaaaattgttgatgGTAATAATTGCATACAATGCAAATCAATATTAACTGatgaacaaacattttatacacatCAAATAAAACATAGCAATGGTTTAGTTAAGGCAAATTCACAAATATTGTTGCCagctatatgtataatatgtagtCAAACATTACAAACGgacattgaaataaaattgcatgcaaaatttcatttgaaacatttattagagaaagatttttattgtaaaaagtgtaataataaaatattatacgacAAACatattgataatattaaagaTTTATGTAAAGaatgtaataatttgaataatgataaatacgataattgtataaaatatgttaaaaataatgataacgGCATTGATGATAAAAGTTctgttaaagaaaataatgaaaatgaatgcCATTTATGTAAACAGTTTTTCTGTACACCAAATAAACTGcaaatacatttaattgaacataatttttatggCATTAATCAATATAGCTGTTATGTTTGTTCTTCTGTATTTACTGGTGCTAGTGGACTCCAAAATCACATGTTGGAACATAATTTAGACACAAAACCATACGAATGTGGAAATTGCCaaatgaatttcttttttcgAGCTGAATTAGACAATCATCGTTATATTCatacaattaataaacaatcCACATCcacatcaaatttattaaaaattgataataaaaatgattttcaatatataacatgtaaatattgttcaaatttatatttaaataatggttttttaacaGAACATTTACAACAATGTCCATATAGAATTAGTCCAAAACAAGAACAATGTGATTTAGACAATAATATTAGCAAAAATGAtaccaaattaattaaaaatggggATCTTAATGAAATTGCTTAA
- Protein Sequence
- MKMLFKGNSSRLELLIEKIQSTRETTDVKEIDSIPGSSKDQNIPGPSHTHTSVESSLTSETEDCSLHIDDLNDDTIFSCTVCNENFTKGKDLLEHEQIHSDNLQFSCLYCPRLFKHKRSRDRHTKLHTGDKKYKCLHCESAFSRRGYNTATALSSHQQNHLKKECKSDSPTSEDTTDTSDLFRCNLCTTTFNKQDQLQNHIIIEHSNTNSPTGSQSSSSDHNINSDSQICGEDLKTICVYCSKEFHTIETMYEHINETHNNHKRTDDLLSPKLEKCDNDLNPFQCDRCSMEFEKFDHLQEHLCNEHWRPFVFNKNEQNLPYNLSNEYNSATDLSKKKKYDDNNDNKSLKRHKTNHAIVDTNDKPFICSCCYVQLPNFKSFLLHMETHMANTNNLFLGFCVFCGESNRDQISFTNHMFGHVISQLPEHYCCCICEKTFDHCDKLQKHLIDEHVLTVYKCNICNETFDTKLLMKLHLNNKHSNECQHFKCHLCNDQVFHNKLSAEIHISMKHYHQFASCIISNQSLLQKAHHHQDDFESSTKLYGILFNCNYCTKSFNDQFSHYMHLIKEHSNNSKEKQTTNTASPSPKTDSCILTSPQEKIQKTTKGLVSLQCAYCYEYCKSKHDLQLHIKNHHVNCGKIKHKCNICDEIYGSAISLADHKLKHCKIVDGNNCIQCKSILTDEQTFYTHQIKHSNGLVKANSQILLPAICIICSQTLQTDIEIKLHAKFHLKHLLEKDFYCKKCNNKILYDKHIDNIKDLCKECNNLNNDKYDNCIKYVKNNDNGIDDKSSVKENNENECHLCKQFFCTPNKLQIHLIEHNFYGINQYSCYVCSSVFTGASGLQNHMLEHNLDTKPYECGNCQMNFFFRAELDNHRYIHTINKQSTSTSNLLKIDNKNDFQYITCKYCSNLYLNNGFLTEHLQQCPYRISPKQEQCDLDNNISKNDTKLIKNGDLNEIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -