Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01006807.1:954-2782[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0004 0.038 14.5 0.8 1 20 203 222 203 224 0.95

2 10 0.011 1.1 9.9 3.0 1 21 268 288 268 289 0.92

3 10 0.00045 0.043 14.3 2.8 1 23 292 315 292 315 0.95

4 10 0.0089 0.85 10.3 1.6 1 23 320 342 320 342 0.96

5 10 0.052 5 7.8 2.9 1 22 347 368 347 370 0.77

6 10 0.00044 0.042 14.4 2.8 3 23 378 398 376 398 0.96

7 10 1.2e-06 0.00011 22.5 2.3 1 23 404 426 404 426 0.99

8 10 0.024 2.3 8.9 2.8 1 23 432 454 432 454 0.97

9 10 6.9e-05 0.0066 16.9 4.4 1 23 460 482 460 482 0.98

10 10 0.00018 0.018 15.6 0.7 1 23 486 509 486 509 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0004	0.038	14.5	0.8	1	20	203	222	203	224	0.95
2	10	0.011	1.1	9.9	3.0	1	21	268	288	268	289	0.92
3	10	0.00045	0.043	14.3	2.8	1	23	292	315	292	315	0.95
4	10	0.0089	0.85	10.3	1.6	1	23	320	342	320	342	0.96
5	10	0.052	5	7.8	2.9	1	22	347	368	347	370	0.77
6	10	0.00044	0.042	14.4	2.8	3	23	378	398	376	398	0.96
7	10	1.2e-06	0.00011	22.5	2.3	1	23	404	426	404	426	0.99
8	10	0.024	2.3	8.9	2.8	1	23	432	454	432	454	0.97
9	10	6.9e-05	0.0066	16.9	4.4	1	23	460	482	460	482	0.98
10	10	0.00018	0.018	15.6	0.7	1	23	486	509	486	509	0.97

Sequence Information

Coding Sequence: atggCATTATCCGGTGTAAGTAATTTGATGAATTTGTGTAGAATATGTTTAACAAGTTCAAAAATAATGACACCATTAAGTAAAACATTGGAAGAtgataaaaatactttaatttCGGAAGCATTAGCCAAAGTTATGGATACAGAGATATACCTCGATAAAGAATGTCCTTCATTCATATGCCCAATGTGTTTaggtttattaaaaatttcatacaatCTAAGACTACGATTCGAAGAATCCACTGCAACGCTAAAAGAACGTCTTCCAAGACATTTTTTCAATGAATCTGTTAAATTCAAGACAGATAAACATCAACAATGTGATGTAGAGTTAGTACATGGTCCGAATAAGTACAGTTTGAACGATATAGTTATAGTGGAGAACGATTCTGATGATTCTACCAGCTATCAATCATTTCTCAGCAATTTAGGCACTACTGTTTCCGCTACTCTCGTTGATAAATCGCATAAATATGAATCGGATAATCCGAAAAACGCTGAAGAGACTGTAGTATTGGTCCGGCCGTCAATTAGATCCAAAGTTAAGAAACCAGTAAATGGAACAAacgatgaaaaaattatagttaGTGCATTTGATGCACGTTTCAAATGTGAAAATTGTGGTAAACAGTACGACCGTGAAGGaatgtttaataaacataGGGACAAATGTGCTgcaaacaaacaaatacaGTCGGCAATTATCGATCATTCTTATATAAGAAGCGCTCAAACTAGTGAGAATGATAGCGACGATAGCGATACGAATTTTCCAGCAAAAAACAACGAGAACACAATATACAAATGTGATCATTGCAGTAAAACGTTTATACTTAAAAATCGGTATTTGAAGCACAAGAAAGGCTGCAATTTCCAATGTACGTATTGCTTGAAAGTGCTTTCGAATAAGCGTTGTCTCTTGAGGCACATTCAAGATTTACACAAGAAAAAGAGCCATCCGTGTCCGCATTGCGATTTCGTTGGTCGCTCAACCAGTGCCTTAGTTTACCACAAATTGAAACACTTCGATAAACAGTTTCAGTGCGACGTGTGCAAGAAAAAGTTCCTCACCAAACATATATTGAAGACGCACGTTCTTTACGCACACGAACGTTCCGCCAGGGATATTTGCCCAGTCTGTGGAAAAGTGTTCCACAATCGATGCAGTTTGAAATTTCATTTGCGCATTCATAATAATGACAGGAATTACACGTGCACGTATTGTCCGAAACGGTTTTACATGTTGAATGCATTAAAACGGCATTTGCGTACACATACCGGAAATCGCCCGTATAAATGTACACATTGTGATAAATGGTTCTTTTCCAGTGGCGAAAAATCAAAACACGAAATGATCCACACCGGATTCAGGCCGTATCATTGTAAATACTGTAGTAAAGCGTTTACGTCTACGTATAACATGAAAGTACACGTTACCACACATGCGGGGCAATACAGGTGCGAGATTTGCGACCGAACTTTTATCGATACTGCATCGCTTGTATTTCATACGAGAACGAAACACGGTATTACAGAAAACGATCAATCGAATGagatatttattaatgtaaatacgAATAAAGATGAGTTTCTTACTGAAGAAACTGTGGTCAACGATGAATCTGAAAATGATATGGAAGAAATTGTAGACGAAGATGGTTTGGAAAATTCTACTAATGTGGTTGTATATTCCGAGGATAATGAAGATGAAATGAGTTATACACATGAAGAATCTGAAGACGATTAA
Protein Sequence: MALSGVSNLMNLCRICLTSSKIMTPLSKTLEDDKNTLISEALAKVMDTEIYLDKECPSFICPMCLGLLKISYNLRLRFEESTATLKERLPRHFFNESVKFKTDKHQQCDVELVHGPNKYSLNDIVIVENDSDDSTSYQSFLSNLGTTVSATLVDKSHKYESDNPKNAEETVVLVRPSIRSKVKKPVNGTNDEKIIVSAFDARFKCENCGKQYDREGMFNKHRDKCAANKQIQSAIIDHSYIRSAQTSENDSDDSDTNFPAKNNENTIYKCDHCSKTFILKNRYLKHKKGCNFQCTYCLKVLSNKRCLLRHIQDLHKKKSHPCPHCDFVGRSTSALVYHKLKHFDKQFQCDVCKKKFLTKHILKTHVLYAHERSARDICPVCGKVFHNRCSLKFHLRIHNNDRNYTCTYCPKRFYMLNALKRHLRTHTGNRPYKCTHCDKWFFSSGEKSKHEMIHTGFRPYHCKYCSKAFTSTYNMKVHVTTHAGQYRCEICDRTFIDTASLVFHTRTKHGITENDQSNEIFINVNTNKDEFLTEETVVNDESENDMEEIVDEDGLENSTNVVVYSEDNEDEMSYTHEESEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -