Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01002491.1:74461-93725[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.3e-05 0.0013 19.1 4.5 1 23 114 136 114 136 0.98

2 7 8.3e-06 0.0008 19.8 5.2 1 23 142 164 142 164 0.98

3 7 1.5e-07 1.4e-05 25.3 0.9 1 23 170 194 170 194 0.99

4 7 7.9e-06 0.00075 19.9 1.3 1 22 206 227 206 230 0.90

5 7 0.15 14 6.4 1.5 2 23 249 271 248 271 0.92

6 7 0.00016 0.016 15.7 2.2 1 20 288 307 288 310 0.94

7 7 0.0014 0.13 12.8 0.0 2 20 324 342 323 344 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.3e-05	0.0013	19.1	4.5	1	23	114	136	114	136	0.98
2	7	8.3e-06	0.0008	19.8	5.2	1	23	142	164	142	164	0.98
3	7	1.5e-07	1.4e-05	25.3	0.9	1	23	170	194	170	194	0.99
4	7	7.9e-06	0.00075	19.9	1.3	1	22	206	227	206	230	0.90
5	7	0.15	14	6.4	1.5	2	23	249	271	248	271	0.92
6	7	0.00016	0.016	15.7	2.2	1	20	288	307	288	310	0.94
7	7	0.0014	0.13	12.8	0.0	2	20	324	342	323	344	0.93

Sequence Information

Coding Sequence: ATGTACGATGATGGTTTTAACGAAATTCGTGCTACCACCTCCACGACAACAccaaccacaacaacaacatcaacaataataacaacaatcgACAATATAACTAACATTCATACATGgacaacaacatcaacaccTATGTATTCCACAAGTCACATGTCAATTCCTTACACGACCTTTGACCCAGGACCTAGCACTTCAAATGTTTATCCACAAACTTCTATGTTCCCATTTCCACCTTATTCCGCCGTTCACGTACCCTTCGACTACCCCCAGatttttatgCACAAGTCTGCGATGCAAATGCATGCACGGGAATTGGGCAGGACTGAAGTGAAGCCACATCAATGCCAACAGTGTCTAAAGTCGTTTAGCAGTAATCATCAATTGGTGCAACATATTCGGGTGCACACTGGAGAAAAACCGTACAAATGTTCCTATTGTGACAGAAGATTTAAGCAATTAAGTCATGTTCAACAACACACCAGACTACATACAGgTGAGCGCCCCTACAAATGCCATTTGCCAGACTGTGGAAGAgcttttatacaattatcaaatttacaaCAACATTTGAGAAATCATGATGCACAAGTGGAACGTGCCAAAAATCGACCGTTTCATTGTAATATTTGTGGAAAAGGATTTGCCACCGAATCTAGTTTAAGGACGCATACGTCGAAAGTAAGCCATTGTATTGGTCGTTTGCAGCAACATGCAGCCCTAATCGGAGGACCAAATGCCACCTCTTGTCCACTTTGCCATAAAATGTTCTTAGGTGGCGAAGCACTTATGGAACACATGAAACACACTCACAAGGATCCCAATGCCTCTGGGGTAGCCACGAAAAGGAGGACAGCCAATCATCCTTGTCCCGTGTGTGGTAAACATTACGTTAATGAAGGATCTTTAAGAAAACACCTTGCGTGTCATCCTGAAACATCTCAGTTGTCGAGTTCACTTAGAATGTGGCCCTGTTCTGTATGTCAAGCAGTTTTTACAAACGAATCAGGACTGCTCTCCCATATGGAACATATGAGAATGGATCCGAAACATCAATTTGCAGCTCAATATGTTCTTTCACGGGCTGCCGCTGAACGACGTGAAAGAGAAACAATTTTGGCAGCTGTTTCAGCTTCTGCGTCTGGTAGTAGTCTTTTAGGACTCACTGGAATGGGTCCAACAAGTGGTAGCCCAATGTGTGCTTCGCCAAGTGCTCACAGTGACAGTTCCTCCGGTAATGGTCGTTTGTCTTCTGCCGGTTCAGAGGCTGGTGGCCtcaataacaacaataacaattgcAACACAAAGCTAGGAGATATTTTAAGAAGTAATAATGGTTTACATCAGCAATATAATGTTGAGGATCAAATACATACGGCTAATCGTATGGCCGTTATTGCGAATATGGTTGGACAAGGTGGTGTACCGCCCGGATTAGGTTCAGATCCATCAGCTGCCGCAAACATTGCCAATATTGCCAATCTTGCCATGCGACTTGGTGTAACACAGGCTAATCAAGTGAACAACTCGAGCAACCCATCCACACCTCCAATATCAAACGACACATTATCATTGTCCGTGAACGCGATGAATGCAATGCGCGCCTCCATGGACAGTATCCGTAATATAGATGTGATGCGTTCATCCGTAATGGATATGTCCTCATCGCAGCAGTCGCAACAGCAACAAGATGCGTTACGAATGCAGCACGCTGAGGCTTTAATTAGATCTCAGGCAGAGACGGCTCTTAGACTAGCTATGAGCCAGGCCTTGCCGCAACTAAATCAACAAGAAAATAGCCATAGTCCACTACGCCATAATGGTCATTATCAGGGCCATCAGGGACAATCGTCACAACAATTAAGTCCTGACTTAACAGAAGCTTTAAGGCTTCAGGAACAAAGGTTAGAACAGGCGTTACGATTGCACGGTAGCGATCCTAGAACATTAGGATTTTCGTTAACAAGTCAACAACAAAACCAACAGCCATGA
Protein Sequence: MYDDGFNEIRATTSTTTPTTTTTSTIITTIDNITNIHTWTTTSTPMYSTSHMSIPYTTFDPGPSTSNVYPQTSMFPFPPYSAVHVPFDYPQIFMHKSAMQMHARELGRTEVKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCSYCDRRFKQLSHVQQHTRLHTGERPYKCHLPDCGRAFIQLSNLQQHLRNHDAQVERAKNRPFHCNICGKGFATESSLRTHTSKVSHCIGRLQQHAALIGGPNATSCPLCHKMFLGGEALMEHMKHTHKDPNASGVATKRRTANHPCPVCGKHYVNEGSLRKHLACHPETSQLSSSLRMWPCSVCQAVFTNESGLLSHMEHMRMDPKHQFAAQYVLSRAAAERRERETILAAVSASASGSSLLGLTGMGPTSGSPMCASPSAHSDSSSGNGRLSSAGSEAGGLNNNNNNCNTKLGDILRSNNGLHQQYNVEDQIHTANRMAVIANMVGQGGVPPGLGSDPSAAANIANIANLAMRLGVTQANQVNNSSNPSTPPISNDTLSLSVNAMNAMRASMDSIRNIDVMRSSVMDMSSSQQSQQQQDALRMQHAEALIRSQAETALRLAMSQALPQLNQQENSHSPLRHNGHYQGHQGQSSQQLSPDLTEALRLQEQRLEQALRLHGSDPRTLGFSLTSQQQNQQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330090;
90% Identity: iTF_01330090;
80% Identity: -