Osur013383.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- Zfpm1
- Assembly
- GCA_004796505.1
- Location
- SSSI01010175.1:423-4008[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.2 4.1e+02 1.8 0.1 3 23 8 28 6 28 0.90 2 15 0.006 0.58 10.8 1.2 1 23 466 488 466 489 0.93 3 15 0.36 35 5.2 0.4 2 23 574 596 573 596 0.89 4 15 0.00025 0.024 15.1 3.2 1 23 604 626 604 626 0.98 5 15 0.00077 0.074 13.6 1.5 2 23 629 650 628 650 0.97 6 15 0.035 3.3 8.4 3.0 1 23 656 678 656 678 0.89 7 15 2.3e-05 0.0022 18.4 5.3 2 23 685 706 684 707 0.95 8 15 0.11 11 6.8 1.3 6 23 721 738 719 738 0.95 9 15 5.3e-05 0.0051 17.3 3.5 2 23 744 766 743 766 0.96 10 15 0.043 4.1 8.1 0.1 2 23 782 802 781 802 0.97 11 15 7.4e-05 0.0071 16.8 1.3 1 20 808 827 808 830 0.92 12 15 6.9e-05 0.0066 16.9 0.2 1 23 838 860 838 860 0.99 13 15 0.0013 0.13 12.9 3.2 1 23 866 888 866 888 0.97 14 15 6e-07 5.7e-05 23.4 3.5 1 23 894 916 894 916 0.98 15 15 0.00089 0.086 13.4 6.0 1 23 922 944 922 945 0.95
Sequence Information
- Coding Sequence
- atgaataatacaaatacTATATGTCCAGTATGTACACTTTATTTAAGACCTGGGATAACATTAAAGCAACATTTAGCCAGCCATCCAAAACAGAAAGTAATTGATGCTTTGGTACGTTTATCTGGCAATGATGGTGAATCATTTAAACTTGACGATAACACTCCAACAACCACATCTGAACCACTACCATCCACCAGTTCGGATGCAGTGGTTGTTAATCAAGCATGGAACAATAATGGAACATCCGTTTCGAACACTATGCAACCAGTTCAAggaaatcatttatttatttatcaacaaaGTATGAGTACTACAGCTCCATCGACTCCAAACGTGCTTAATATCAATCCACTAACACAACAATATGTTATACCGACTGTTTTCAATTCACAAATGATGCCATATAtttatcaacaacaacaagttaTTATGGCGAGTAATGCTTGCGTTCCACCAACTGGAATACGTGCCCTACCATTTGAAATGCCATCCATTGAGGGTGGCACAATCGTTAGTGAAGTAGTTGAAGGTAATGAGAATGAAATCAAAGAAATCACTGAAGAAAAGGAACCGAAAGATGAgaaattaacaacaacaattcaAATTGATGATGTTAAAGTGAATAAGATGCCAACAAATGAAGTAGTTATTGAGGAAATTGATTCAGATTCGCCGGAAGAATATCAAAATCGATCGGAGTTTGTAGAAACTGCATCATCGCCACAAAATGAAGAAATCACTGCACCGAAAGACAATTGGAATTTGGAATTGAATAAAGATTGTCAGACGCAAACAACTAATAATGAACCACCAGTGGAAGAATTGGACTATCCTGAAGATCGTCcggaattttattatgttgaaaaCGATGATGGAGACATTCAATATAACAATCCAAATATTCTGCAACCAGTTagtgaacaacaacaacaactggACATGATTGGAATGGACAATATGCAAGTACTTATCAATGATTTATCatcaaatcaaattatatCACAAGTGGATCATTTTGAGAATTCCCAGCCAGAACGTCCCGGTGTTCTAATGACGATTGGAGATGTGGTCGACAACGAACAACGTCAATTGGAGGACAGTATGTCACGTGAGAGTTCAAATGTGAATATACGAACCGATGAACGTATGCCAGCCAGGGGTGAATTGTCTGGACAAGAAAGTATCGGCGGTTCCAGTGATATAACATGGAATCGCATTCAGTACCACGAAGGCAGCTCAGGAATGTCGGCTTCTTACGATTTATTAGCCAGAGAATCGTGGGAGGCATCAGATAGCAGCTCCGATATGGAAATGCCTAATCAAATCGCTGAAGgtaataaagaaattgatgAAACAGCACCGAGTATTGTTAGTTTTTCTGGACCGCCTTTAAACTACAAATGTCCGTCATGTGATGAGGCGTTCAGTAATTTTAAAGAACGTAGAGATCATGAAATCGAACATCATCCAGAAAAAGTGATTCGGAATGCATTAATTGGTTCGGGTATTGGTAAGAAAAAGGTGAAAAAATTAACGATTAAATTGAAAACGGACAAAAGTGAAAAACCAGAAACTAGTGAAAATAATTTCGATAATGTATTTacgaataaattgaaattggaaaatatgaaAACGGAACAATCCGAAAATCAAACCACGCCTGAACCTGTTGATCAAGTGAAAGTTGATGAAAATGGTATGCCGATTGAGTTGAAAACCGTATGTTCGATATGTGATTGTGTGGTAGCGAATATAAGGGCATTAAAATTGCACAAATTTCAAGTACATAACATAACATCTGATATACGTCATAAATGTAATACATGTGGTGAAGGTTTTCGTAACGAATTCAAATATACtcaacatttaaaaatccATCCATTAGAATGTAGATTGTGTGGTAAATTGTTCTTCCGCCGCCAAAATATCCAATTGCATATGAAACGACATTTAGGTTTAAAACCGTACAAATGTGATTTGTGTAATAAGGCATTTGTAACGAAACAGAAACACGATGAACACCGGAATAGTCATACGGGTGAATCGCCAATAAAATGCACATTGTGTGACGAAACATTTCGACGACATTCGAATTTGGTGCAGCATCGCAATCGTCACCATttgaatataaagaaaaatgttaaggattatatttgtttttgtggTGAGGTTTTCcattcgaaaaaaaaactcgCCTGGCATAAGGAGATCCACGATCCAAAGCCGAAATCGTGCACCCAATGTACGGAGAAGTTTGTACACATGTCGAGTTTAACGCGACATATGCGTCGTGCTCACAATGAAAAGTTTCTACCGAGCGAGAATCGTGTAACTGAAAATGTTCAATGTCCGATTTGTAAGGGCACCTATTTGAGATCATCATTGGATGCACATATACGAAACCATAGCGGCGTACGGCCGTACACTTgtctaatttgtaataaagaTTTCACAACAAAATGGAATCTAAAATTGCACAAATGGACGCATGCATCGCGTACATCAAAACCTTTCAAATGTGATCAATGCAAAGGGGCATTTATACGTGAATCGGACTATATAGCACATATGAATTCGCATAAAAGTGTACGGCCGTACACGTGTAATTATTGTGGTGCACAATTTATAAGGAAATACAATTGTTTAAGACATGTTAAAGAACATGAAAATGGTAAAACGTTTAATTGTCAAGTGTGTGGCAAATCGTTTCATCGTTCGTATTATTTGAAGGATCATATGAGGGTCCACAGTGGTATTAGACCATATGCATGCCATATTTGTGGAAAAACTTCAACAACAAAATCCAATCATAATAAACACGTACAAATACATCATGCTAGAGAACCAGTTAGTacggaaaattaa
- Protein Sequence
- MNNTNTICPVCTLYLRPGITLKQHLASHPKQKVIDALVRLSGNDGESFKLDDNTPTTTSEPLPSTSSDAVVVNQAWNNNGTSVSNTMQPVQGNHLFIYQQSMSTTAPSTPNVLNINPLTQQYVIPTVFNSQMMPYIYQQQQVIMASNACVPPTGIRALPFEMPSIEGGTIVSEVVEGNENEIKEITEEKEPKDEKLTTTIQIDDVKVNKMPTNEVVIEEIDSDSPEEYQNRSEFVETASSPQNEEITAPKDNWNLELNKDCQTQTTNNEPPVEELDYPEDRPEFYYVENDDGDIQYNNPNILQPVSEQQQQLDMIGMDNMQVLINDLSSNQIISQVDHFENSQPERPGVLMTIGDVVDNEQRQLEDSMSRESSNVNIRTDERMPARGELSGQESIGGSSDITWNRIQYHEGSSGMSASYDLLARESWEASDSSSDMEMPNQIAEGNKEIDETAPSIVSFSGPPLNYKCPSCDEAFSNFKERRDHEIEHHPEKVIRNALIGSGIGKKKVKKLTIKLKTDKSEKPETSENNFDNVFTNKLKLENMKTEQSENQTTPEPVDQVKVDENGMPIELKTVCSICDCVVANIRALKLHKFQVHNITSDIRHKCNTCGEGFRNEFKYTQHLKIHPLECRLCGKLFFRRQNIQLHMKRHLGLKPYKCDLCNKAFVTKQKHDEHRNSHTGESPIKCTLCDETFRRHSNLVQHRNRHHLNIKKNVKDYICFCGEVFHSKKKLAWHKEIHDPKPKSCTQCTEKFVHMSSLTRHMRRAHNEKFLPSENRVTENVQCPICKGTYLRSSLDAHIRNHSGVRPYTCLICNKDFTTKWNLKLHKWTHASRTSKPFKCDQCKGAFIRESDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCLRHVKEHENGKTFNCQVCGKSFHRSYYLKDHMRVHSGIRPYACHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -