Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01010285.1:15069-17703[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0055 0.52 10.9 0.4 1 23 217 239 217 239 0.92

2 10 2.7e-07 2.6e-05 24.5 2.9 1 23 245 267 245 267 0.98

3 10 1.3e-06 0.00012 22.4 0.3 1 23 273 295 273 295 0.98

4 10 6.9e-05 0.0066 16.9 0.4 2 23 302 323 301 323 0.96

5 10 9.6e-06 0.00092 19.6 0.5 1 23 329 351 329 351 0.95

6 10 4.9e-05 0.0047 17.4 2.3 1 23 357 379 357 379 0.97

7 10 1.5e-05 0.0015 19.0 4.5 1 23 385 407 385 407 0.98

8 10 0.002 0.19 12.3 0.7 1 23 427 449 427 449 0.97

9 10 9e-05 0.0087 16.5 0.2 2 23 455 476 454 476 0.97

10 10 7.5e-05 0.0071 16.8 0.3 3 23 484 504 482 504 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0055	0.52	10.9	0.4	1	23	217	239	217	239	0.92
2	10	2.7e-07	2.6e-05	24.5	2.9	1	23	245	267	245	267	0.98
3	10	1.3e-06	0.00012	22.4	0.3	1	23	273	295	273	295	0.98
4	10	6.9e-05	0.0066	16.9	0.4	2	23	302	323	301	323	0.96
5	10	9.6e-06	0.00092	19.6	0.5	1	23	329	351	329	351	0.95
6	10	4.9e-05	0.0047	17.4	2.3	1	23	357	379	357	379	0.97
7	10	1.5e-05	0.0015	19.0	4.5	1	23	385	407	385	407	0.98
8	10	0.002	0.19	12.3	0.7	1	23	427	449	427	449	0.97
9	10	9e-05	0.0087	16.5	0.2	2	23	455	476	454	476	0.97
10	10	7.5e-05	0.0071	16.8	0.3	3	23	484	504	482	504	0.97

Sequence Information

Coding Sequence: ATGGAAACTGAAGAACAGTCAACAAGTTCGGAAAATCGTTCGGCGGACGTTTTACGTGACATGAAAATATGTCGTTTGTGTTTAACAAACGATGAgcctttattgaatatttacgAAAAACCAACTAAAGACAAACATTTCATACCGTTGCCGCTACAAATTATGGCTTGTGCCGCAATAGAGGTATTTGCCAAAGACGATATGCCTCGTTATTTGTGCAAACAATGCCATTCGCTCATATCCAACGTTTATACATTCAAATCGAATTGTAAAAAAGTTGAACAAGCtttaaaaaactttctaaTTACTGGCCAGTTGACGAAACCCGTTTTGAAGCCAATTCGAGCTTTGGATGGTGGAAAACCACGTCAAAAATCGGTGGAAAGTTTTAAACGCGAAGCTCCAGCCTCCCAAAAAGCCCCACAACCGAAACGAATGAAAATGGAAGACAACGAGAATGTTATTATGTTGAATTTCACTGAAGACTCACAACCAGAAACCGAAAATGACCCGGAAGAGCATTTGGAGCCGCCAGAAGACAATGATGAATGTGTTTTAGGCCTGTCTGATATTTCCCAAGATTTATTCCAATCCGCATCGGCGTCTGAAGGCGAACAAAAGTCGAATAAAGTTGTTAAAACCGATTGCTATGCTTGTCCACACTGCAGTCGGTCTTTTCCATTAAAACAAATGCTGGATTTACATGTGGTTAACCATAACAGGGAACGCAGCTTCTCTTGCGATGAATGCGATCGTAAATTCTTCACCAAATACGATTTAACGAAACACATGAACACCCATTCGTCGGAGAGGCCGTTTAAATGTGTTGTTTGCGATAAGGCATTCAGTCGCGAAGCATTATTACAACGTCACGAAAAAATCCACACCGATGTGGCGAAATTAGTGTGTACGGATTGCGATAAAACATTCCTAACACGTATATCATTGGAACAGCATATGGAAAAACACAAAAAGAAGCGCCCATACACGTGTAACATTTGTAACAAGAGTTTCGTTTTCAAACAGGGCTTAGAACGCCACGAAGTGGTCCACAGTGAAGACAAACCGCACAAATGCAACTATTGTGAGGCGAGTTTTACATCagcaattaaattaacacGTCATTTAACATCTCATGCCGGATTGCGGCCGTATCCGTGCAAGATATGCGGCCGTACATTCTTGTTGAGCCATCATTTAACCAGACATATGCGTAGCCATTATGCTGTCGAGTCATTATCAACTGATAATATCAGTGCTGATACAGTTATTGGTCAATATAAATGCGATATGTGTTCAATGTCATTTTTACGTAAAGATTCATTAGTTGAACACACAACCATACATTCAATGGTCAATTTAAAATGCGTTATATGTAATACGAAGTTTGAATCGGCCGACGATGTCCGCCAACACATCAATACACATTTGTCTGGTTTGCCATTTGGATGTGAAAAGTGCGATTATTCATTCGAATCACAAGAACAATTGGAGGAACACGAAATGAAACACGCCGAAATGGAATATGAGGAACAAATTGAAAAGGAAGTGGTTATGGAGGCGAAAATGCGTGCCGCCAGTTCGCATGGTTCGATGAGCGAATATGAAGAGGATGAATTGGGTGATGAGGACGATGATGATGTTGTGGAATTTACAATTTCCAATGATTTAAATAATCCCAGTGTTATACGTCGTTCGAAACGTAGTAAACAAGAGAAAACGTTTTCGGAATTTTTACGAGACGATGTTGAATTGGAAATGGATGAAGATACGAATAGTCAACAAACGGAAACTTATCATATTGAACAAGAGGAACAAGATGACGATAAAACTGGTACAATAAAACCGATTATAAGATCGGAAAATACGAAAGTCTATACAAGAAAGAATATTGAACGGAAATTGCCGGTCATTGAAACGGATGCCATACAAACGGCATCATTGGAAGAAATTACACAGCCAGCGAGTTCTATTGACGATTTAGGATTGAGTCCAGAAGCAATAAATGCGataccaaataaaaaagtcgTTAATATGAAATTGGGTGACAAAGTGGTGCGCGTTCAAAAGTATTTGGTGAGCAAAGAAGAGATGAAAGCGATGGCAAAACAAGGCATTTTGGAAATGAAGGGTGGTACGGTGTTGTTGAAGAAAACTGGCGgtcaacaaatattaaatgccACCATAAAACCGGTGAATGATTTGGATTTCGTGAATCAAGGTAGGGCGAAAGTGTTGAAGCCACAATTTAAGAAAACTTATGAAAGGAAACACACTGTTGCACCACAAAGTACTGAAACGGAAACCGtagaatatatttatgaaGATGCTGTAAATGTTAAAGAAGAACATTCTGAAATGCATGTTTAA
Protein Sequence: METEEQSTSSENRSADVLRDMKICRLCLTNDEPLLNIYEKPTKDKHFIPLPLQIMACAAIEVFAKDDMPRYLCKQCHSLISNVYTFKSNCKKVEQALKNFLITGQLTKPVLKPIRALDGGKPRQKSVESFKREAPASQKAPQPKRMKMEDNENVIMLNFTEDSQPETENDPEEHLEPPEDNDECVLGLSDISQDLFQSASASEGEQKSNKVVKTDCYACPHCSRSFPLKQMLDLHVVNHNRERSFSCDECDRKFFTKYDLTKHMNTHSSERPFKCVVCDKAFSREALLQRHEKIHTDVAKLVCTDCDKTFLTRISLEQHMEKHKKKRPYTCNICNKSFVFKQGLERHEVVHSEDKPHKCNYCEASFTSAIKLTRHLTSHAGLRPYPCKICGRTFLLSHHLTRHMRSHYAVESLSTDNISADTVIGQYKCDMCSMSFLRKDSLVEHTTIHSMVNLKCVICNTKFESADDVRQHINTHLSGLPFGCEKCDYSFESQEQLEEHEMKHAEMEYEEQIEKEVVMEAKMRAASSHGSMSEYEEDELGDEDDDDVVEFTISNDLNNPSVIRRSKRSKQEKTFSEFLRDDVELEMDEDTNSQQTETYHIEQEEQDDDKTGTIKPIIRSENTKVYTRKNIERKLPVIETDAIQTASLEEITQPASSIDDLGLSPEAINAIPNKKVVNMKLGDKVVRVQKYLVSKEEMKAMAKQGILEMKGGTVLLKKTGGQQILNATIKPVNDLDFVNQGRAKVLKPQFKKTYERKHTVAPQSTETETVEYIYEDAVNVKEEHSEMHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -