Osur017750.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01010235.1:8202-10450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.11 11 6.8 0.4 6 21 14 29 8 30 0.86 2 15 2 1.9e+02 2.9 0.1 3 20 37 54 35 56 0.93 3 15 5.6 5.4e+02 1.4 0.1 1 12 146 157 146 160 0.85 4 15 0.2 19 6.0 4.6 1 21 293 313 293 314 0.94 5 15 3.6e-05 0.0035 17.8 1.9 1 23 325 347 325 347 0.99 6 15 0.00019 0.019 15.5 1.6 1 23 368 390 368 390 0.98 7 15 0.042 4 8.2 0.4 1 22 418 438 418 439 0.73 8 15 0.00088 0.084 13.4 0.8 3 23 447 466 445 466 0.95 9 15 6.6e-05 0.0064 16.9 0.3 1 20 472 491 472 493 0.95 10 15 6.1e-05 0.0058 17.1 2.4 1 23 500 522 500 522 0.98 11 15 9.2e-07 8.8e-05 22.8 2.9 1 23 528 550 528 550 0.98 12 15 6.2e-06 0.0006 20.2 9.1 1 23 556 578 556 578 0.99 13 15 3e-05 0.0029 18.0 0.4 1 23 584 606 584 606 0.98 14 15 1.7e-05 0.0016 18.8 0.3 1 23 610 632 610 632 0.98 15 15 0.00022 0.021 15.3 0.1 1 23 640 663 640 663 0.95
Sequence Information
- Coding Sequence
- atggaaaatactgatttaaaattaaattgtccaTTATGTTGTAACGAAACATTCAGTTCAATTGACTCGTTAAAATACCATTTATTAAGTTTggtggaaaatatattttgccCTAATTGTAGCGATCGTTtcgaaaatatacaaaaattaattcaacattTAGACGAGGATTGTACAAAGAGCGATAATGGGGAGAAATCTAACGTAGATTACATCAAAATTGAAATGATTAATTCATTAGATGAAGGCCAGAAAgatgtggaaaaaattaacgaacaaactttaataaaaatagaaaatgatCAAAATAAACAGCACATAGAAAATAGTATTTTGGCACAAGCTTTGCTTGGCAGCAACGATGAGGTGGACGAGGACCAAGAAGAAGTTAAACCAACTGAAGAGGAAGCCGAGGAAAACTCTGAAAATACGATGTATTTGTGTCAAATGTGtaacataaactttaattcaaTTGAAGATCACTTAGAACGTTATCATCAGGGCGAAGAAGTCCTATTAGAAACTGAAGATGGTGTAGAGGAAATTACCCAGAAACAAGAAACTGTCGAAGAGGACGACGAAGACATGGAAGAAGTGTACGAAATAAACTATGAAGAGGACACCGATTCGGAGTCAAATTTTGAATCCGGCgtgaataaaaatgaaacattaaCAGAAGAAGAGTGTATAGACAATGAGGGGCGCGTTTATACAAGAAAAGTAGTGAAAATCGACAAATTCTGGATGGAAAGAGAATCGAAAACACGTGAACCGAATGTACAAAAATACCGATTAGACAAAgttaatagtaaaataataaaaattacggaCACTGAAGCGGAAGAAATTGAAGATAAAAcatcaattataaaaatttacagttGTCCAAATTGTACATTACAATTTCCACATTACgaactattttttaaacataaatgtCGGCCAGCACAGTCAAACAAACCACAACAAAAGTATCGTTGCGAGTATTGTAATGtgttatttaatagtttaaaaCAATTGCAAACGCATTTGAAGACGCACGTGGCCGATGGCGATGTGGATGATAGtgcaaataaaacaacaacagttACATTGGGCCCGTACGAATGTAATGTATGCCAAACAAAGTTTCCATCATTTAAATCGTTACGTTTGCACAGTAGAATGCATGAACCGGTGCCAGTGAAGCACGTTGAAGCGCCAGTAAAATACACGATAACCGGCGATGAAGAAGACAATTCAGACAATGTGTTCACATGTCCAATATGTGAAAAATCCTACAATGTAGCATATAAAGATGTACATTTAAAATCGCACACTGACGTCGATATGAtcaattgtaaaatatgtaatcGTAAATTCCGTAAAGACAACATTGCGATGCACATGAAGGCGCATTCGAATGTAAAAAAGTTCACGTGTTCGTATTGTAAGAAGGCATTTGTTACATTTGATGCATTAAACGATCATATTACTAATCAGTGCCAGAAAAGGCAGTACGAATGCCAGTTTTGTGGTCGGCGATTTTCACGGCCACATGAAAAAGTTAAACACGAACGTATTCATACTGGTGAAAAGCCGCATGTATGCGAAGTGTGTGGAAAAGCGTTTCGTGTCAGTTATTGTTTAACGTTACATATGCGTACACATTCTGGTACAAGACCGTATCAATGTGAACATTGtaataaacgttttaaatCGCATAGTGCTTACAATCATCATATACGGACGCATAGTGATGTGCGGGCGTACAAATGCCCGTTTTGTCCGAAAGCATTTAAAACGATGGTACAATTAGCCGGTCATAAAAATAGTCACATAAAACCGTTTTCATGTACGAAATGTAATCGGCCGTTTGCTAGTTTGTATGCTGTTAGGGCGCACATGGAAACGCATACGAGAgacaataatttgaaatatgaTTGTTGGTTGTGTGGTGCATCGTATGCTAGGGCGTTTGCATTGAAGGATCATATGAAGGCCCAGCACGGTGATCAAGTTAATATGACAATAGAGGAATTGCAAGAACAACAAGATGGAATCGTTATTGGTGAAGAGGATGTGATTAATGAAGAGGTGGCTGTTAGTGCAAGTCAAATTGAAGTGGAAATGAATGAAGGAATGGAAATTGAAACACAGTAG
- Protein Sequence
- MENTDLKLNCPLCCNETFSSIDSLKYHLLSLVENIFCPNCSDRFENIQKLIQHLDEDCTKSDNGEKSNVDYIKIEMINSLDEGQKDVEKINEQTLIKIENDQNKQHIENSILAQALLGSNDEVDEDQEEVKPTEEEAEENSENTMYLCQMCNINFNSIEDHLERYHQGEEVLLETEDGVEEITQKQETVEEDDEDMEEVYEINYEEDTDSESNFESGVNKNETLTEEECIDNEGRVYTRKVVKIDKFWMERESKTREPNVQKYRLDKVNSKIIKITDTEAEEIEDKTSIIKIYSCPNCTLQFPHYELFFKHKCRPAQSNKPQQKYRCEYCNVLFNSLKQLQTHLKTHVADGDVDDSANKTTTVTLGPYECNVCQTKFPSFKSLRLHSRMHEPVPVKHVEAPVKYTITGDEEDNSDNVFTCPICEKSYNVAYKDVHLKSHTDVDMINCKICNRKFRKDNIAMHMKAHSNVKKFTCSYCKKAFVTFDALNDHITNQCQKRQYECQFCGRRFSRPHEKVKHERIHTGEKPHVCEVCGKAFRVSYCLTLHMRTHSGTRPYQCEHCNKRFKSHSAYNHHIRTHSDVRAYKCPFCPKAFKTMVQLAGHKNSHIKPFSCTKCNRPFASLYAVRAHMETHTRDNNLKYDCWLCGASYARAFALKDHMKAQHGDQVNMTIEELQEQQDGIVIGEEDVINEEVAVSASQIEVEMNEGMEIETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -