Osur010396.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01010365.1:23813-25432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00041 0.04 14.4 5.7 1 23 102 125 102 125 0.96 2 11 0.0041 0.39 11.3 0.3 1 21 137 157 137 157 0.96 3 11 1.5e-06 0.00015 22.1 1.0 2 23 187 209 187 209 0.96 4 11 2.3e-06 0.00022 21.6 1.6 1 23 215 237 215 237 0.98 5 11 0.00011 0.011 16.2 2.9 1 23 243 265 243 265 0.96 6 11 2.9e-06 0.00028 21.2 0.6 1 19 271 289 271 291 0.96 7 11 5.2e-05 0.0049 17.3 2.9 1 23 302 324 302 324 0.98 8 11 6.6e-05 0.0063 17.0 3.9 1 23 330 352 330 352 0.97 9 11 0.00067 0.065 13.8 0.8 1 23 358 381 358 381 0.97 10 11 1.5e-06 0.00014 22.2 3.2 1 23 395 417 395 417 0.98 11 11 1.7e-06 0.00016 22.0 1.6 1 23 423 446 423 446 0.96
Sequence Information
- Coding Sequence
- atgaatgaaaaatgcaatatttgtttaaaattaaatgaaaatctaCGTGTTTTAAACGATCCACATTCAACAAATACACTAATTCTCAACAAACTAAAAGTTTGTGTGCCAGAAATCGATTGgaatatttcattaaagttatgtttaaattgtgaaaatgaaCTTAATAAACTTCATGCTTTCAAGGAATTATGTATACAGTCGtataaaatgttacaaatgaaaaatctTTATAAAGAAAGCAATGAAGATCCCAGTAAAATATTTGACGAATATTTTGGGGAAGTAAAGTCTGATGCTACATTCATTTGCTATCATTGTAATCAACATTTTAaggaaaaatcaaaattaatttctcaCATTCGTCAGACTCACTCTAGTGATGTACGAATTCGTCGcagaaaacaatataattgtgcaaattgtttaaaaaactatACAACAGAAATGgctttaaaaaaacatattaaatgtTGCCTGAAAACAACGGAAGTCCCAAAAGATGAAATaggcaaaataaatattatagaaaatgacGAACTTTGTAATACAATTCCAACTTGTGGTTTATGTGGAACAACATTTAGCAACAAATACTTGCTCAACAGGCACACAAGAAATGTTCATGCCACcgagaaaaaattcaaatgcgACACATGTGACCGAACATTTGTTTCTTCAGTTTATTTAAACGCCCATAAAAGGTATCACACCGGTGAACGGTCTCACATTTGTTCATTTTGCGGCAAAGGATTTATTACAACCAGCGATTTGTACCATCACGAGAAAATCCATGCCAACAAACGTGCATACCGTTGTGAAATTTGTCCGAAAGCATTCAACACGTCATCCGATTTACATAAGCATAAAGTATGCGTTCATTTAGATCGCAGCAAATGGAAATTTGAATGTACGTATTGTAAACGGCGATTTCCATTGAAAACCAACTTGGACACGCATACGAAAACCCATACGGGGGAGAAAAATTTCGCTTGCCATCTGTGCGATCGAAAATGCATCAATAAATCCGTACTGAGACGTCATATCGAGACGCACAGTAATGCTGTatcatttaaatgtgatttatGTTTGCAACGTTACAAATATCAGAAAAGCTTGGACGCACATATGGCCAAAATACATGGAATAGGAAATATGAAGGTTGTGGAAcgtgtaaaaaaatatttttgccaTTTATGCCCGAAAGGATATTATGATAATAGTAAATTACAGAAACACATACGAACTCATACCGGCGAAAGGCCATTTCGGTGTCCGGTTTGtgataaatgttttattgataAGTCTTATGTTAAACAACACGTAAAACTTGCACACGGACTTAATGCTGGtgaatttgaagaaaatcaaacattttatagTACGGTAGGGTAA
- Protein Sequence
- MNEKCNICLKLNENLRVLNDPHSTNTLILNKLKVCVPEIDWNISLKLCLNCENELNKLHAFKELCIQSYKMLQMKNLYKESNEDPSKIFDEYFGEVKSDATFICYHCNQHFKEKSKLISHIRQTHSSDVRIRRRKQYNCANCLKNYTTEMALKKHIKCCLKTTEVPKDEIGKINIIENDELCNTIPTCGLCGTTFSNKYLLNRHTRNVHATEKKFKCDTCDRTFVSSVYLNAHKRYHTGERSHICSFCGKGFITTSDLYHHEKIHANKRAYRCEICPKAFNTSSDLHKHKVCVHLDRSKWKFECTYCKRRFPLKTNLDTHTKTHTGEKNFACHLCDRKCINKSVLRRHIETHSNAVSFKCDLCLQRYKYQKSLDAHMAKIHGIGNMKVVERVKKYFCHLCPKGYYDNSKLQKHIRTHTGERPFRCPVCDKCFIDKSYVKQHVKLAHGLNAGEFEENQTFYSTVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -