Osur003032.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01003113.1:2807-7130[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0017 0.16 12.5 1.9 3 23 186 207 185 207 0.94 2 20 0.23 22 5.8 7.9 1 23 330 352 330 353 0.95 3 20 0.1 10 6.9 1.1 1 23 388 411 388 411 0.95 4 20 0.0018 0.17 12.4 0.2 1 22 444 465 444 467 0.90 5 20 0.0025 0.24 12.0 1.1 2 23 549 570 548 570 0.96 6 20 0.016 1.5 9.5 0.2 1 23 593 615 593 615 0.95 7 20 0.0046 0.44 11.2 0.3 3 23 620 640 619 640 0.96 8 20 5.2e-06 0.0005 20.4 1.8 1 23 670 692 670 692 0.96 9 20 0.077 7.4 7.3 0.1 2 19 710 727 709 727 0.95 10 20 0.00091 0.087 13.4 2.1 2 23 746 767 745 767 0.97 11 20 7.7e-05 0.0073 16.8 7.4 1 23 806 828 806 828 0.97 12 20 1.8 1.7e+02 3.0 1.5 3 23 849 870 849 870 0.94 13 20 0.00034 0.032 14.7 1.3 1 23 887 909 887 909 0.98 14 20 0.018 1.7 9.3 0.3 2 23 923 945 922 945 0.94 15 20 0.00082 0.079 13.5 0.1 1 23 964 986 964 986 0.95 16 20 0.03 2.8 8.6 0.1 1 23 1017 1040 1017 1040 0.95 17 20 0.0019 0.18 12.4 2.9 2 23 1051 1072 1051 1072 0.97 18 20 2.8e-06 0.00027 21.3 1.0 2 23 1108 1130 1107 1130 0.96 19 20 5.9e-06 0.00056 20.3 1.0 1 23 1137 1159 1137 1159 0.99 20 20 0.001 0.097 13.2 0.2 1 23 1187 1210 1187 1210 0.94
Sequence Information
- Coding Sequence
- ATGAGTGAATTAGTAGCTAGTTTCCAGTCCTGCTGTAGGCTGTGTCTGTGCGACAAAACTGATACTCTTGTGTCGGTTTTTGGTGGTGCGACTGGTGACCGTTCATTGTCTCAGAAGATTTTGGCTTTTGTAGCTGTTGAGataaattcatcggataaattatctaaaatgGTATGCAATCCTTGTGTGTCCAAATTGGAGTCTTGGCAAAAATTCAAAGATGAATGCAGTCAAAATCAAGATAAACTtgaacaattattacaatccTCTACAAACGCATCCAAACTTCATGATATGAGCATACAGATAAAAGAGGAACCAGCTGATGACGATGAAGAAGTGGTAATTCTTAATGAAAGTGCTATTCCAATGATAAAAAATGAACCAGTAGAATCAGTAGAAGAAATGGAACCAGAAGCTCAAATGGAGGACGAAGAATTTGATTATCCGCCACCATTAACACCCTATATTCAACATTCTGTTGAAGATGACGATTCACAAACTTCCCAGACTTCTCAAAATAGCAGTATTTCGGAATCTAATAACTCTCGAATATGTGCTGTATGCGAGAAATCATTTAGCACTGCATACAATCGACGAAAGCACGAAAAGCACATGCATGGAATGACGGATTTGAAAAAAACAGCTCCATTAACGCCTGTTAGCACTGCAAGCACTGATGGCCAGTCACAAACTTCTGCTGAATCGGAAACAAATCAGCCAGATGGCGAAGAAACAATGGAAAAATCGACGGTGGACAgtgaacaacaaaaaattgcatttgccGCCGGTTTGAAGTTATTGCAAACCAATGAAACACCCAGAGCGTTTGAACCGCTGTCAAAAGTTGAATTTAgctatatagaaaaatgtaaagcAATGATTCGAATGTATAAAACTCGCGTTTGTGCCTGTCACGAGGTTTCGTACAACAATTTAAAGGGACTTTTGTCGCACCTTCGTTCTGTTCAAATTTGGTTCCCAGTGTTTACATGCTATCATTGCATGATAACATATACAGATCGGTCTACATATACGCGCCATTATACGCGTcatcataaatttaatgatgaaTATCGGCAAGGTATACTTATAGAaggattaataaaattatcaaatttgcGCAAACGAAGCGAAATGAAAACGCGTCTCTATGAAAATTTTAGATGCGTTAAATGTAGGTTTGTATACAGTTTTTATGAGGATTATGTTAAACACGTGAATGAAGACCACATTCCAAGTAAATTTCCTGTTCCATGTATTTGTAAAGCTGTCCACAACGATGTGGAAACATACAAGAAGCACGTTTACTATAGCTGTTTAGTAGAGTTTCAGTGTGATTTATGCTCTGAAGGTTTTTCATCCaatgaattgtttataaaacatgCAATTGATCAACATGATAATTCGGAAGGGTTTTCCCTACTTCAGGATGACAACTTTAAAACAAGAAGATCGTCGTCTACCACAAGGGTtacgccaccaccaccacctgatttaattataaatacgaAACGAAGgagttcattttataataaagcgCCCATATTGGAACCTGAACTGGAAATCGAGGAACTTGAAGAAAAGAAATCAAACACATTTAAAGTAAGAAATCCAGCTTCTTCATGGAAAAGAACGCCCACAAAATGTTTGTCGTGCGAAAAGGTTTATTCGTCTTATGCGAACATGATGCGCCATTACAAATTACATCAATTGGAACAACAATCGCAAAATGGCAGCGATATGGAAATTGATGATTCAGAAAAGACGTTCTGCTATTCATGTCCTGATTGTGGTGGAATGTACGATAATGAGAAATGGGAAAAACATTTACGCGACAAACACAAAGAGAAAAACTGTGCGGATTGCGACCGCGTCTTCCAATTTCAAACGGAACTTGACCAACATCGCGCCATGCATTTGAACTTGAAGGTGTACAGAGACTCCAAGACGAAATCGTACAAAAGTACAATGCTTAAAAGCCCGAATGCGACAGCCGAAATTATCCATGTTTGCGATCGATGCGACACAACTTTCTCCACAAATGATGAGCTACAAAAGCATCAACTGTTGCACGAAACTATGCCGCAATTATCGCCGCATAAAGAACTCAAAACGGCCAAAGTCGAATGTACGGATTGCAATTTAGCATTCAGCGGATATCGCCAGCTTTGGGAACACGATCACGCTAATCACCCAGAGAAGCGTACACCACAGTCCAAAAACTATCCAAAGCAGTGCAAATATTgtgataaaatgttttatacagGTGGATCTTATTTTAATCATAAACAAATGCATGAACGTATCGTGCTCGCAAACACGATCAATGAAACTAATGAAATGCCAAAAACATCGAAACGctcaaaacaaaacaatagcGAAGAGGATGATGAAGTGGATGTGGAATCTTACCACACCTGTAATCATTGCTTCAAAGTGTTTGCGTCAAAGAGTCAGTTAAAGAAACATAACAAGTCTCATGTTAAGTCCACAACGACATCGAACAGTACTGAGAAAGGAAAGGGCGCGAAAAAGGTTTGGTGTGACTCGTGCCACGTTTCCTGCGACAATATGGAAGCATTGGAACAGCACAGGCTGGAAGAACACAGTACGAGGAAGGATGCAAACAAATCAACAGCACAGCCGAATCAAGTGTTCACTTGTGATGTGTGTGTGATGACATTTACAACGAAATTAGCGCTGAAAAAACATAAAGAACGTCATGCCCAAGAAATTCGGATTATGTCGAAAATGCAGACGGTCTATTGCAAATTCTGTAAGAGTGCTTTCGATTCAGTACCATCATTGAACAAGCATATGCAAGATGAACACAGACAGGAGCTGGAAAAGACCAAGACGCAAACATCTGGCAAGAAAGTGGCACAATATCCGTGCGACATTTGCAGCAAAAACTTCCAATCTCCAACTGCTTTGTATGTGCATCAAGGATGGCATCGGCGTACCACTTATGGATTGACTAACAAACCGAAAGCCGCCAAAACAGCGAAAATTGTCAAACAAAAAGACGTGCCATCCAAATCGGCGTTTCAGTGTTCAACTTGTTCAGCCGAATTGCCAAACAATACAGCATTGCAGATTCATATTTTGGAGAAACATCGTAATGTTGACGCTATTATTCTTACGCCGCGCTGTAATACGTGTAAATTCGATTTTAAATCGCAAGACGAATATGAGAAGCATAAACGGTTGCATGACTTTTTGGAAAAACAACAGAATAATGTTCACTTAACAGCAAGTATTAAACCAAAAACTGCAAAACCAGCCGCGAAGGACTCGAATTCGGATAAACCGAAATTAACATGTCAACATTGCGGTTTTAATTTTACTAGAGCGGACAATTTAGCCACTCATATTcgtaatatacataatattgtaaatggtGAATACAAATGTACACAATGTGATCGCGTTTTTGATAAACAAATGTCGTTAACAATACATTTAAAAGTGCATGAAAAACAGAAATTGATTACAAATTCGAAAAATGAGAAATCTCGTGAAAAACCCAAATCGAATAATACAAAGTCCGCAGCTTATTCCTGTTCCATTTGTAGTATGAGTTTTGATTTACCAAAAGACCTTCGTACACATACTATTAACGCTCATCCTTTCTGA
- Protein Sequence
- MSELVASFQSCCRLCLCDKTDTLVSVFGGATGDRSLSQKILAFVAVEINSSDKLSKMVCNPCVSKLESWQKFKDECSQNQDKLEQLLQSSTNASKLHDMSIQIKEEPADDDEEVVILNESAIPMIKNEPVESVEEMEPEAQMEDEEFDYPPPLTPYIQHSVEDDDSQTSQTSQNSSISESNNSRICAVCEKSFSTAYNRRKHEKHMHGMTDLKKTAPLTPVSTASTDGQSQTSAESETNQPDGEETMEKSTVDSEQQKIAFAAGLKLLQTNETPRAFEPLSKVEFSYIEKCKAMIRMYKTRVCACHEVSYNNLKGLLSHLRSVQIWFPVFTCYHCMITYTDRSTYTRHYTRHHKFNDEYRQGILIEGLIKLSNLRKRSEMKTRLYENFRCVKCRFVYSFYEDYVKHVNEDHIPSKFPVPCICKAVHNDVETYKKHVYYSCLVEFQCDLCSEGFSSNELFIKHAIDQHDNSEGFSLLQDDNFKTRRSSSTTRVTPPPPPDLIINTKRRSSFYNKAPILEPELEIEELEEKKSNTFKVRNPASSWKRTPTKCLSCEKVYSSYANMMRHYKLHQLEQQSQNGSDMEIDDSEKTFCYSCPDCGGMYDNEKWEKHLRDKHKEKNCADCDRVFQFQTELDQHRAMHLNLKVYRDSKTKSYKSTMLKSPNATAEIIHVCDRCDTTFSTNDELQKHQLLHETMPQLSPHKELKTAKVECTDCNLAFSGYRQLWEHDHANHPEKRTPQSKNYPKQCKYCDKMFYTGGSYFNHKQMHERIVLANTINETNEMPKTSKRSKQNNSEEDDEVDVESYHTCNHCFKVFASKSQLKKHNKSHVKSTTTSNSTEKGKGAKKVWCDSCHVSCDNMEALEQHRLEEHSTRKDANKSTAQPNQVFTCDVCVMTFTTKLALKKHKERHAQEIRIMSKMQTVYCKFCKSAFDSVPSLNKHMQDEHRQELEKTKTQTSGKKVAQYPCDICSKNFQSPTALYVHQGWHRRTTYGLTNKPKAAKTAKIVKQKDVPSKSAFQCSTCSAELPNNTALQIHILEKHRNVDAIILTPRCNTCKFDFKSQDEYEKHKRLHDFLEKQQNNVHLTASIKPKTAKPAAKDSNSDKPKLTCQHCGFNFTRADNLATHIRNIHNIVNGEYKCTQCDRVFDKQMSLTIHLKVHEKQKLITNSKNEKSREKPKSNNTKSAAYSCSICSMSFDLPKDLRTHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -