Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01003185.1:40122-42923[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00022 0.021 15.3 4.1 1 23 324 346 324 346 0.98

2 12 0.00066 0.063 13.8 1.6 1 23 348 371 348 371 0.95

3 12 3e-07 2.9e-05 24.3 2.3 2 23 433 454 432 454 0.97

4 12 0.00011 0.01 16.3 0.7 1 23 460 482 460 482 0.97

5 12 5.8e-05 0.0055 17.1 2.0 1 23 488 510 488 510 0.98

6 12 1.4e-05 0.0013 19.1 1.2 1 23 516 538 516 538 0.98

7 12 0.00019 0.018 15.5 0.5 1 23 544 566 544 566 0.98

8 12 1.8e-07 1.7e-05 25.0 1.8 1 23 574 596 574 596 0.98

9 12 0.0015 0.14 12.7 0.2 1 23 602 624 602 624 0.96

10 12 1.5e-05 0.0015 19.0 1.2 1 23 630 652 630 652 0.98

11 12 0.00093 0.089 13.3 0.5 1 23 658 680 658 680 0.97

12 12 1.5e-05 0.0014 19.0 0.2 1 23 686 708 686 708 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00022	0.021	15.3	4.1	1	23	324	346	324	346	0.98
2	12	0.00066	0.063	13.8	1.6	1	23	348	371	348	371	0.95
3	12	3e-07	2.9e-05	24.3	2.3	2	23	433	454	432	454	0.97
4	12	0.00011	0.01	16.3	0.7	1	23	460	482	460	482	0.97
5	12	5.8e-05	0.0055	17.1	2.0	1	23	488	510	488	510	0.98
6	12	1.4e-05	0.0013	19.1	1.2	1	23	516	538	516	538	0.98
7	12	0.00019	0.018	15.5	0.5	1	23	544	566	544	566	0.98
8	12	1.8e-07	1.7e-05	25.0	1.8	1	23	574	596	574	596	0.98
9	12	0.0015	0.14	12.7	0.2	1	23	602	624	602	624	0.96
10	12	1.5e-05	0.0015	19.0	1.2	1	23	630	652	630	652	0.98
11	12	0.00093	0.089	13.3	0.5	1	23	658	680	658	680	0.97
12	12	1.5e-05	0.0014	19.0	0.2	1	23	686	708	686	708	0.97

Sequence Information

Coding Sequence: atgGCCGATAATGCTCATTTCGGAGATTTATGCAGATTATGTGCTACAAAAACTTCTATATTACTTGCTGTAAATATATTCGAGAGTGAAGGAGCTATACGGcaaataagtaaaaaaatcCAATCATGTCTTCCCGTACAGGTACACGAAGCCGATGAATTGCCAAAAATGGTGTGTGAAAATTGTCTTTTAAAGCTAGAACTGTTTTCCGATTTCCGTGAACGTTCAATCCGAGCTGAACGACtattaattgatttgtttaaagAAATCAACAGTGGCAACAAGTTGCACACAGATTCACAGCCGCTTAGTGTTGTCACAATGGaccaaaatgaaataattatggTACAACATCACCAACTGCTGAACGATACCAGTATACAAAGTGTTGGCGATGTCGATTTGTCACATTTAGGACATCGTGATGGAATGATTGTCGAACAAGAAATCATTTTAACGCACCATTCATTGAACAACATCGATTTACATAATCATGAACTCACAAGTCAGGACTTATCAAACCAAAGTTTACAAACTCAGGACAATATTATGGTGGAATCTGGTCCAGATGCACACAATATGCAAGTTACTCGTTTTACCGAAGATTTAATGCAACAAGACCATCAATTGTTGACTGAACAGTTTCGTTTATCACAAGAATTACATCACGTTGATATGgaggaaaatttacaaattacaaacaacGATattaAAACCAATTCTTTTACGAATACTCAGAATTACTCTCCGGATGACAAAATTAATCATCATATTGAAGATGAACCGAAAATTGTGGAATCACCAGAGCAGGAGTACAATTATAACAAAGATATCGATTTAAAGTTCGATGATGACAGTAGTACCGGAAATTCTTTATTAGTTGATGAGGATCTGAACGATGTACATATAGACAAGCCATTGTATTTAATACCGCcccaaaaatttaatgattcaGAAGCCAAAGATTGGTTTTATTGTAATGTATGTGGTAAAAACTATGAACATCATGCCgaatttgaaaaacattacGAAACACATTTCCATAAATGTACTATTTGTTTAGCGATGTTTACAACTGAAGATACATTAAAGTCGCATAGGAAAGACGTGCATGATTTGAGTGAAGAAgacattaaaatgaataatggtGTTTTGAAAGACGCAGTTGGCAAAAATGTTGCTGATGGTACGAATAATAATGAAGAAGTGGATGATGAACAAGTTAAAGAGGAAGAAGAGGAATTTGATGATCCCGGAGAATCgagtaataataaaagaaagaaATGGTCACCAAAGGAGTGTAAAGTGTGTGGTAAAActtataaaactaattacaaattaacGGAACATATGCGGaaacatactggcgaaaaaccatataaatgtagTTCATGTGAGAAAACATTTCGTTCTAAAATTGGTTTAGCTCAACACGAAGCAAAACATACAGgaCAATATGACTATTCGTGTCCGACATGTGGAAAAGGCTTCCAGTGTAAAAGTTACTTGATGGTACATCAAAGGGTACATTCTGACGTGAAACCATATCCATGTACAACGTGTggtcaaaatttcaaaacgaAGCAGTCTTTAGTTGATCACACCAATAGACATTTAGGTGTAAAGCCGTACATTTGTGATATTTGTGGTCGGGGCTTTATAACTAGAGGTCTATGTAAAGCTCATCAGAAGGTGCATTCAGGCTTAGACAATAGAAAGTattcttgtaaaatatgtaCGAAAATGTTTGTGTCAAAAAGTTATTTACAAACGCACTTGCGAATACATACTGGAGAGAAACCGTTCATGTGTGAAGTGTGTGGTAAAGGTTTTCTAACTAGAGTAGATTTAAGAATACATTCAACGATGCACACTGGTGAAAAGTCGTACGTTTGCGATTTGTGTGGGAAGGCATTTGCACGTCGTGATGCTTTAAGGTGTCATAGAAGATCGCATACTGGAGAACGACCTTACAGTTGTGAATTATGTGGTCAAACATTTACTCAATTTACACCAATGGCAATTCATAAGCGtctacatactggcgaaagaCCATATGCTTGTGAAACTTGTGGAAAAGCTTTTGTGTCTCGATCGACGATGCTGGCACACGCTAAAAAGCACACCCGGtga
Protein Sequence: MADNAHFGDLCRLCATKTSILLAVNIFESEGAIRQISKKIQSCLPVQVHEADELPKMVCENCLLKLELFSDFRERSIRAERLLIDLFKEINSGNKLHTDSQPLSVVTMDQNEIIMVQHHQLLNDTSIQSVGDVDLSHLGHRDGMIVEQEIILTHHSLNNIDLHNHELTSQDLSNQSLQTQDNIMVESGPDAHNMQVTRFTEDLMQQDHQLLTEQFRLSQELHHVDMEENLQITNNDIKTNSFTNTQNYSPDDKINHHIEDEPKIVESPEQEYNYNKDIDLKFDDDSSTGNSLLVDEDLNDVHIDKPLYLIPPQKFNDSEAKDWFYCNVCGKNYEHHAEFEKHYETHFHKCTICLAMFTTEDTLKSHRKDVHDLSEEDIKMNNGVLKDAVGKNVADGTNNNEEVDDEQVKEEEEEFDDPGESSNNKRKKWSPKECKVCGKTYKTNYKLTEHMRKHTGEKPYKCSSCEKTFRSKIGLAQHEAKHTGQYDYSCPTCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGQNFKTKQSLVDHTNRHLGVKPYICDICGRGFITRGLCKAHQKVHSGLDNRKYSCKICTKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSYVCDLCGKAFARRDALRCHRRSHTGERPYSCELCGQTFTQFTPMAIHKRLHTGERPYACETCGKAFVSRSTMLAHAKKHTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345167;
90% Identity: -
80% Identity: -