Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01007666.1:18870-20563[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00029 0.028 14.9 2.6 1 23 67 89 67 89 0.98

2 16 0.0041 0.39 11.3 0.9 2 23 95 116 95 116 0.97

3 16 0.29 28 5.5 7.7 1 21 122 142 122 144 0.94

4 16 2.2e-05 0.0022 18.4 3.0 1 23 150 172 150 172 0.97

5 16 0.011 1 10.0 2.2 1 23 179 201 179 201 0.97

6 16 2.9e-05 0.0028 18.1 0.4 2 23 208 229 207 229 0.96

7 16 2.7e-07 2.6e-05 24.5 2.7 1 23 234 257 234 257 0.97

8 16 2.3e-05 0.0022 18.4 1.3 3 23 262 282 261 282 0.97

9 16 2.3e-05 0.0022 18.4 1.3 3 23 291 312 290 312 0.96

10 16 3.7e-06 0.00036 20.9 2.1 1 23 320 342 320 342 0.98

11 16 3.5e-07 3.4e-05 24.1 1.6 1 23 346 368 346 368 0.98

12 16 3.6e-07 3.5e-05 24.1 1.9 1 23 374 396 374 396 0.99

13 16 0.19 18 6.1 5.6 1 23 402 424 402 424 0.98

14 16 8.5e-05 0.0081 16.6 1.5 1 23 430 452 430 452 0.99

15 16 1.7e-05 0.0017 18.8 4.1 1 22 458 479 458 482 0.92

16 16 5.4e-05 0.0051 17.2 0.2 1 23 485 508 485 508 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00029	0.028	14.9	2.6	1	23	67	89	67	89	0.98
2	16	0.0041	0.39	11.3	0.9	2	23	95	116	95	116	0.97
3	16	0.29	28	5.5	7.7	1	21	122	142	122	144	0.94
4	16	2.2e-05	0.0022	18.4	3.0	1	23	150	172	150	172	0.97
5	16	0.011	1	10.0	2.2	1	23	179	201	179	201	0.97
6	16	2.9e-05	0.0028	18.1	0.4	2	23	208	229	207	229	0.96
7	16	2.7e-07	2.6e-05	24.5	2.7	1	23	234	257	234	257	0.97
8	16	2.3e-05	0.0022	18.4	1.3	3	23	262	282	261	282	0.97
9	16	2.3e-05	0.0022	18.4	1.3	3	23	291	312	290	312	0.96
10	16	3.7e-06	0.00036	20.9	2.1	1	23	320	342	320	342	0.98
11	16	3.5e-07	3.4e-05	24.1	1.6	1	23	346	368	346	368	0.98
12	16	3.6e-07	3.5e-05	24.1	1.9	1	23	374	396	374	396	0.99
13	16	0.19	18	6.1	5.6	1	23	402	424	402	424	0.98
14	16	8.5e-05	0.0081	16.6	1.5	1	23	430	452	430	452	0.99
15	16	1.7e-05	0.0017	18.8	4.1	1	22	458	479	458	482	0.92
16	16	5.4e-05	0.0051	17.2	0.2	1	23	485	508	485	508	0.96

Sequence Information

Coding Sequence: ATGGACAACATGGACATGGTTAGTATTAAATCCGAGCCAGAAATTGACgaaatcgaaataaaaagCGAAATAAATGAAGTAAAATTAGAGAATTTTGAAATATCTATCAACGAATTGGATacagaatttgaaaaatttcacaaaGAAGATGAAAAATTGAACAGTGGAAAAACCGTATTGGAAAACAGTACAACAGCTTATAAATGTGATATGTGTAATAAGATTTTCATCGAATTTTCCGAATACAAACAACATAAAAAGCAGCATTTTATCGAAAAACGACGTTgcaatatttgtaatattgtttGCCAAAGTGTTAGTAAATTGCAAGTCCATTTAAATGGTCATTTGGGCTTAAAACCGTACCAATGTTTAGAATGTAGTAAAAAGTTCACTTGTAAATATCAATTGAAACTGCATGGAAGATGTCATACGGATGAATTACGTTATAAATGCAAGAAATGTGAAAAAGCTTTCAAACATTTAGGCTCTTTACGTAGCCACAATCTCGTCCATCAGGAGAAAATCAAAGAATTCATATGCAAGATTTGTTCGGAAGACTGTGAAAACATAACAACGTTTAGAAAACACATGGAAAATCATGGCACAAAAACTGTAATCAGTTGTGGTGTTTgtgataaaaaattcaaaacagaTCGTTTACTACAAGTCCATTTAAACAGTCACAAAGAATTACAATTTCCATGtgaatattgtgaaaaaatctttaaaacttTGTATCATTTGAAACGTCATATAAAACGTGCCCACATTCCGAATTTTTGTGAAGAATGCAATGAAACGTTCTACGATCGTTCCGCTTTTACGAAACATTTGAAACAACATAAACCAATAGTACAAGAACCAATTTGTAATATGTGTAATAAGAAATtcgataaattgaaaaatcttaCAGAACACATACGTTTACAACATAGAAAAGACGATACAAAGCAGcacaaatgtaaaatttgtgaaaaagaGTTCATCAACGCCAGTTTGTTGAGAAATCATGAAAAAAGGCAcgacaaaaatttcaaatgcaCCCAATGTGATAAAGTGTTCAGTTCTAGATATAATTTAGAGATGCACACTGGCACACATACTGGCAGAAAACGTTTTAAATGCACAATTTGCGATAAACTTTATTCGACAAAATCTAGTCTAACAACACACATTAGTACACATTCTTCTGAACGTAATTTTCAGTGTGAACAATGCATGAAACAATTTAAGTCACACCGAAGACTGTACGTTCACAAACAATCACATAATGTTGAGGAAAAATATCAATGTGatgtttgtttaatgaaatttcgtgtaaaacaatatttaaaaagtcatATGATCAAACACACGAATTTAAAACGTTTCAAATGCGATGTTTGTAAAAAAGCtttcaaacataaaaaatcATATGTGAAACATATGAAGTTAGGTAgacataaaaattacatttgtgATGTTTGTGATGCTAgttttaatacaaaacaaacattattgGATCATTTGAAAGAGTTGCATGAAGAAAACGTTAAAATCGAACAGTTTGtagattaa
Protein Sequence: MDNMDMVSIKSEPEIDEIEIKSEINEVKLENFEISINELDTEFEKFHKEDEKLNSGKTVLENSTTAYKCDMCNKIFIEFSEYKQHKKQHFIEKRRCNICNIVCQSVSKLQVHLNGHLGLKPYQCLECSKKFTCKYQLKLHGRCHTDELRYKCKKCEKAFKHLGSLRSHNLVHQEKIKEFICKICSEDCENITTFRKHMENHGTKTVISCGVCDKKFKTDRLLQVHLNSHKELQFPCEYCEKIFKTLYHLKRHIKRAHIPNFCEECNETFYDRSAFTKHLKQHKPIVQEPICNMCNKKFDKLKNLTEHIRLQHRKDDTKQHKCKICEKEFINASLLRNHEKRHDKNFKCTQCDKVFSSRYNLEMHTGTHTGRKRFKCTICDKLYSTKSSLTTHISTHSSERNFQCEQCMKQFKSHRRLYVHKQSHNVEEKYQCDVCLMKFRVKQYLKSHMIKHTNLKRFKCDVCKKAFKHKKSYVKHMKLGRHKNYICDVCDASFNTKQTLLDHLKELHEENVKIEQFVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -