Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01008991.1:3948-7166[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-06 0.00016 22.0 0.4 1 23 174 196 174 196 0.98

2 12 0.00056 0.053 14.0 0.7 2 23 201 222 200 222 0.97

3 12 1.9e-07 1.8e-05 25.0 0.7 1 23 228 250 228 250 0.98

4 12 9.8e-06 0.00094 19.6 3.0 3 23 258 278 256 278 0.96

5 12 1.6e-06 0.00015 22.1 1.0 3 23 286 306 284 306 0.96

6 12 5.8e-06 0.00056 20.3 2.8 1 23 312 334 312 334 0.97

7 12 2.2e-07 2.1e-05 24.8 0.4 1 23 340 362 340 362 0.98

8 12 1.5e-05 0.0014 19.0 1.9 1 23 368 390 368 390 0.99

9 12 1.8e-06 0.00018 21.9 0.1 1 23 396 418 396 418 0.99

10 12 1.6e-05 0.0016 18.9 5.8 1 23 424 446 424 446 0.98

11 12 0.00032 0.031 14.8 3.1 1 23 452 474 452 474 0.97

12 12 4.7e-05 0.0045 17.4 1.1 1 23 480 502 480 502 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-06	0.00016	22.0	0.4	1	23	174	196	174	196	0.98
2	12	0.00056	0.053	14.0	0.7	2	23	201	222	200	222	0.97
3	12	1.9e-07	1.8e-05	25.0	0.7	1	23	228	250	228	250	0.98
4	12	9.8e-06	0.00094	19.6	3.0	3	23	258	278	256	278	0.96
5	12	1.6e-06	0.00015	22.1	1.0	3	23	286	306	284	306	0.96
6	12	5.8e-06	0.00056	20.3	2.8	1	23	312	334	312	334	0.97
7	12	2.2e-07	2.1e-05	24.8	0.4	1	23	340	362	340	362	0.98
8	12	1.5e-05	0.0014	19.0	1.9	1	23	368	390	368	390	0.99
9	12	1.8e-06	0.00018	21.9	0.1	1	23	396	418	396	418	0.99
10	12	1.6e-05	0.0016	18.9	5.8	1	23	424	446	424	446	0.98
11	12	0.00032	0.031	14.8	3.1	1	23	452	474	452	474	0.97
12	12	4.7e-05	0.0045	17.4	1.1	1	23	480	502	480	502	0.98

Sequence Information

Coding Sequence: atgaacCAAGAAAATGTACGAATAATCACAGAATTAGATAAAATATGTCGTACATGTTTAGCTGAAAAAGATTCAGAAAATTTACGATCACTATATGAAAATTCTTTAGACTCTCATTTACTTGGGGTTACAACAGTGaatGCAAACAAGGGCGATGGTTTACCTGCTAACATATGTAACGATTGTATATTTACATTGAACATTGcagtaaattttaaagatCAATGTATTAAATCAGACACAGAATTAAGGCATGCAATATTTCCGAgccaaacaattatttatcgTGCAATTACACTATTAGGAAACAATTCAGAAGAAACTATTGAAGAGAATGATATCAGTTCACACATAGAATTAATCCCACAACGTCCACAAGAACAAATATgctttgaaaaagaaaaacctAGTGAATCAAAACCAGAATCTGAAAATGATTTACAAACATTGGTAAATGtagatattaataaaaaagccGATGATTTAGTTAAAGAATCCCAAGAAATTTCTTCAGAGTCGTATCCTTGTCGAGAATGTGGAAAATCTTTTACATTAGAAAGCAGTTTGCAAATGCACCTGATCAAACATGGACAAAAGTTGAAGTGCGATGTTTGTTCAGTAGAGTTTAATACTGTTAAATTGTTTAGAAGTCACATAAAAACACACGCCAATTACAAACCGTTCGTTTGTAAACAATGTAATAAAGCATTTGCAGTTAGTACAAGTCTAGTTAAACACATGAGAACTCATGGTGGCGAAAGAAAACATCTTTGTACCACATGTGGTAAAAGGTTTTACGAACAGGGCCATCTAGTGATTCATATACGGacacatactggtgaaaaacctATAATTTGTAGCATTTGTGGTAAAAGGTTTTCCGATCCGCATGGTTTAACTACACATAATAAAACCCACACAGGAGAACGAAAACACAGTTGCAACATTTGTGGTAAAAGTTTTGCCCATTCTTTCGTACTGACAGCTCATAAACGAATTCATACTGGTGAAAGACCATTTGTGTGCTCAACTTGCGGCTCAGCGTTTGCAACATCTTCATATTTAACTATCCATATGCGAACTCATACACAAGAAAGACCTTATAAATGTCAATCTTGTCCTAAGAGTTTTATTAGTAAATGTGCTTTGGCAGCTCATAATCGCACTCATACTGGTGAAAAGAAATTCCAATGTAACGTTTGTGGGAAACGTGCTGGACGTGCAGCTGATCTTCAAATACATATGCGATCTCATACAGGTGAAAAGCcttattgttgtaatatttgtCCAAAACGGTACCACACTTCAAGTAATTTAGCTACTCACAAACGAACTCATTTGGGCATAAAAGACCACATTTGTTCTATATGTAATAAAGCTTTTGGTGATCCAAGAACATTAAAATGTCACTTAAGGACACACACAGGAGAAAAACCATATATGTGTTCATTTTGTGGTAATCGTTATACACAGTCCGGCCAACTTGCGCTTCACAGAAAAACGCATCAAATTCAAAACACATAA
Protein Sequence: MNQENVRIITELDKICRTCLAEKDSENLRSLYENSLDSHLLGVTTVNANKGDGLPANICNDCIFTLNIAVNFKDQCIKSDTELRHAIFPSQTIIYRAITLLGNNSEETIEENDISSHIELIPQRPQEQICFEKEKPSESKPESENDLQTLVNVDINKKADDLVKESQEISSESYPCRECGKSFTLESSLQMHLIKHGQKLKCDVCSVEFNTVKLFRSHIKTHANYKPFVCKQCNKAFAVSTSLVKHMRTHGGERKHLCTTCGKRFYEQGHLVIHIRTHTGEKPIICSICGKRFSDPHGLTTHNKTHTGERKHSCNICGKSFAHSFVLTAHKRIHTGERPFVCSTCGSAFATSSYLTIHMRTHTQERPYKCQSCPKSFISKCALAAHNRTHTGEKKFQCNVCGKRAGRAADLQIHMRSHTGEKPYCCNICPKRYHTSSNLATHKRTHLGIKDHICSICNKAFGDPRTLKCHLRTHTGEKPYMCSFCGNRYTQSGQLALHRKTHQIQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345158;
90% Identity: -
80% Identity: -