Osur011260.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01004139.1:21064-24338[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.024 2.3 8.9 0.1 1 20 143 162 143 164 0.95 2 17 6.2e-05 0.006 17.0 2.0 2 23 198 219 197 219 0.97 3 17 1.1e-05 0.001 19.5 2.1 1 23 224 246 224 246 0.98 4 17 2.2e-05 0.0021 18.5 5.4 1 23 252 274 252 274 0.97 5 17 0.0005 0.048 14.2 1.8 1 20 280 299 280 299 0.96 6 17 4.9e-05 0.0047 17.4 1.6 1 23 308 330 308 330 0.96 7 17 1.6e-06 0.00015 22.1 0.1 1 23 453 476 453 476 0.97 8 17 1.5e-05 0.0014 19.0 4.4 1 23 482 504 482 504 0.97 9 17 3.6e-06 0.00034 21.0 2.3 1 23 510 532 510 532 0.98 10 17 1.2e-05 0.0011 19.3 0.8 1 23 541 564 541 564 0.95 11 17 0.016 1.6 9.4 1.3 1 23 576 598 576 598 0.93 12 17 0.0021 0.2 12.2 8.0 1 23 604 626 604 626 0.97 13 17 1.2e-06 0.00012 22.4 0.5 1 23 633 655 633 655 0.96 14 17 1.6e-06 0.00015 22.1 1.2 1 23 661 683 661 683 0.98 15 17 2.3e-07 2.2e-05 24.7 0.9 3 23 691 711 689 711 0.96 16 17 1.2e-05 0.0012 19.3 0.1 1 23 717 739 717 739 0.99 17 17 0.87 83 4.0 1.6 1 23 744 767 744 767 0.93
Sequence Information
- Coding Sequence
- ATGGATTTAGAACaaatagatttaaataaaGTGTGTAGGACGTGTAAAAATCCATCAGAAGCCATGAGTTCGTTGTTTGAAAATACTGAAAATGTCAATGAGAATCCCCATCTCGACGAGATGCTAATGGCCTTTACTTCCATacaaATCAGAAGTGGAGACGGTTTACCATCGAATATATGCCAATTATGTATCGACCAATTGAAAAATGCATTTGCCTTCAAAAAACAATGCGAACAAACAGATACCAGTTTAagaatgtatttaaaaagtttaaaattaggCGAAATCAAAGAAGAATTACAAAACACAGAATTCTTCGTTTCTATCGACAATTTTTTGAGTACTGACCTTTCAACGATACACCAACAAACTGAAAGTTACGAAGACGATTTCGTACAATTATTAGACaataatcaattcattttcactTGTCGATGGTGCCAGGGTGTATTCAAGTCAGTCGAAAGTCTACGATCTCATAGAATTTTATCAAATGgtacatttaaatgtacaaaCCAATCGGACGTTAAAGATGTAATCCAGAAGCAGGATTTTATTAAGTTGCTGGACAACGATCAAATGATATTAACTTGCCAGGAATGTACGAAACTTTTTACATCATTAGACAATTTCCGTATTCATAAACGAACCCATAATGGTGTACTcttcaaatgtaaacaatgtGATAAAGAGTACACACGTTTAAATTCATTGCAAAGGCACGAATTATCACATAGTAATCAAAAAGTGCATGTTTGtcgtatatgtaataaaacattaaccCGATCTGATCATTTGAAACGCCATTTAACAACGCATTTGAAAGAGAAACCGTTTTCTTGTATGAAATGCAACAGGGGCTTCAGTAGATatgaacatttaaataatcatttaccCAAATGTAAGGGAGAAAAAGTGCACATTTGTAATGTGTGCAATAAAGTGTTTTATCGAGAGGACAGTTTAGAGTTGCATAAAAAGTTGCACGAAAACCAACAACCTTCTTTGCCAACAATAGAAAATCTTGATAACattgaaaaacattattatgaaatagATTACGATGATAATGTGGTGTTTTCCGATTCCGAACAGGAAGAGGATGACATTGTAGAAAAATCCACTGTTGTAGATTCGAAACCAATTGAACAAGCTACAGAAATATCTGATAATTGCGATAATAACGATGAAGAGACAGCAGCAAACTCAGATATGGAGTATTTACCGCACAGAGTGCCAAAAAAACGGGGCCGCGGTCGTCCACGTAAAAATTCATTTGCTGTGGGTGGTAAATTGAACAAAAGCCGTCGTGGTCGGCCGCCAATCATCAAAGATGAAGAGGAAACTGGCGATTTTCCATGTCCAATATGCGATAATATGTTCACATCTTTAAGTCAGTTGAATAAACATGCACGTATCGAACATGAACAAGTACagaaattcaaatgtaaagtGTGTGACAAAGAATTTAATCGATTAAATCATTTGAAAAGACATAATCTATCACATTCGGAAACTAAACCGTACGATTGTGATGTTTGTGCGAAAAGTTTCGCCCGTAAAGATCATTTAACACAGCATAGAAAGTCGCATGAAAAGCAACAACAACGTTTTGAATTCGAATGTGATTTATGTGAGAAATCATTCAATAGGGCGGAACTTTTAACCAAACACAAAGTGACTAAACATGGTGTGGGCGAGAAAATGCCATTGGAGAAGAAACATGAATGTCCGATTTgtaagaaattatttacaacGGAAAAATATCGTGATGTACATGTAAAAGGGCACAATGGCGAGAAACGTCATCAATGTAAAACGTGTAACAAGTTCTTTTTGTCtaaatcacatttaaatgaaCACATGAAATTCCATGATGATCATTCCAAGAAGTTCTTATGTTCTGAATGTGGACAACGGTTTATCAGGAATGATTATTTAGTGATACATATGAGACGGCATCGTGGAGAAAAGCcattcaaatgtaaatattgtggAAAAGGTTTTCCACGTACTACAGACTTGACAGTTCACGAGCGTTATCATACAGGCGAGAAAACGCATCTATGTACAATTTGTGGTCGCGGATTCGGAAGGGCATACAACTTAACGGTGCACATGAGGACACACACGGGTGAAAAGCCATATCAATGCACTTATTGCGAGGCAGCTTTCGCCCAAGGAAACGACTTAAAAGCTCATATAAGAAGACACACTGGTGAAAGGTTTCATTGTGAACTTTGTAGCGAAAGTTTTCTTATGGGTTATTTATTAACGCAACACAAACGGAACGTGCATGGATTAAATGTTGTTAGTAATATAAGACGTCTAAAGCCGGTACATAAAAAAGAAGAGAATCCAGACGAACCGCCACCAATAGAAATTCCGTTGCCTAAGCCTGTGGTGCCTGAAAACgtatttaattcatttcatCAGTCTCATTTCGTCGATGTAAATGCGATACCAATTccaaaacaatga
- Protein Sequence
- MDLEQIDLNKVCRTCKNPSEAMSSLFENTENVNENPHLDEMLMAFTSIQIRSGDGLPSNICQLCIDQLKNAFAFKKQCEQTDTSLRMYLKSLKLGEIKEELQNTEFFVSIDNFLSTDLSTIHQQTESYEDDFVQLLDNNQFIFTCRWCQGVFKSVESLRSHRILSNGTFKCTNQSDVKDVIQKQDFIKLLDNDQMILTCQECTKLFTSLDNFRIHKRTHNGVLFKCKQCDKEYTRLNSLQRHELSHSNQKVHVCRICNKTLTRSDHLKRHLTTHLKEKPFSCMKCNRGFSRYEHLNNHLPKCKGEKVHICNVCNKVFYREDSLELHKKLHENQQPSLPTIENLDNIEKHYYEIDYDDNVVFSDSEQEEDDIVEKSTVVDSKPIEQATEISDNCDNNDEETAANSDMEYLPHRVPKKRGRGRPRKNSFAVGGKLNKSRRGRPPIIKDEEETGDFPCPICDNMFTSLSQLNKHARIEHEQVQKFKCKVCDKEFNRLNHLKRHNLSHSETKPYDCDVCAKSFARKDHLTQHRKSHEKQQQRFEFECDLCEKSFNRAELLTKHKVTKHGVGEKMPLEKKHECPICKKLFTTEKYRDVHVKGHNGEKRHQCKTCNKFFLSKSHLNEHMKFHDDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCEAAFAQGNDLKAHIRRHTGERFHCELCSESFLMGYLLTQHKRNVHGLNVVSNIRRLKPVHKKEENPDEPPPIEIPLPKPVVPENVFNSFHQSHFVDVNAIPIPKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -