Osur018081.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01010642.1:3127-4755[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-07 0.00039 20.1 0.0 2 36 12 46 11 51 0.92 2 2 8.8 4.5e+03 -2.5 0.0 23 31 101 109 101 109 0.89
Sequence Information
- Coding Sequence
- ATGTCAAAAAGAGGACGTTATGGATCATGGTccgaaaatgatttattgctTGCTGTTGCCGCGTACAAAAATGGTAATTACGGTTTAAATGAGTGCAGTCGTGTGTATGGTGTTCCTAAAGCAACTATCAAGAGACATGCAGATAAAAAAAACCTTATTTGCAATAATGTTAAATCAATGGGCAGACGTCCGGTATTTTCTGCAgatatggaaaaaattatttctgagCACATCCTTCACTTAGAAGAATGCTTTTTTGGTTTAACCATTAAGGAAGTCAGAAAACTAGCTTTTGATGTTGCGGAAAAATATGACTTACCAAATAGTTTCAacaaagataaaaaaattgctgGAAAAAAATGGTTCTACGCATTTTTGAAACGGAATCCCCAACTTTCGCTTCGGAAACCCGAAGGAACCTCAATGGCGAGAGCTAGAGGCTTTAATAGAGAGAATGTGAATCATTTTTTCGATCTCTTAGAACAAATTGTGGATAAGCATAAATTTACAGCTGACACTATATTTAACGTGGACGAATCTGGGTTTACCACTGTGCAAAAGAGTCTCCCAAAAATAATAGCTCGTAAAGGAAAGCACCAAGTAGGAAGTATAACAAGTGGTGAACGGGGCGTTAATACAACCATGGTGTGCGCAGTTAGTGCTGCAGGTCTATATATTCCACCCATGATTATTTTTAAGAGGAAAAAATTACACCCTGATCTTAAAATTGGAGCACCTCCTGCTAGTTTAGTTACGGTTTCGGACACGGGATACATAAACTCAGATCTCTTTGTTGAGTGGCTGAAACATTTCCAAAAGCATATCAACTgcaatgtaaataataaagttcTGCTATTGCTTGATGGCCACACAACACATAGCAAAAATTTGCAGGCTTGTGAGTTTGCTAGGCAAAATGGAATTGTCTTGCTTCAACTGCCTGGCCATACCACCCACCGTTTACAGCCTTTGGATATAGCATTTTTTGGTCCTCTGCAGACTTATTTTACACAAGCTCAGGAAACGTTTCTTCGCTTATATAAAGGGGATAAAATATACCAAACCCAAATGTCAAAATTACTAAATGAGGCATATGGCAAAGCGGCTACTGTGGGAATTGCAGAGAGTGCCTTCCGTGCTTCCGGAATTTGGCCGGTGAATAGGCATGTATTTACCGATGACCAATTTGCACCAGCTGATGTTTTGCAACCTTCTGAAACCCCTGTTTCAACTTCTAGTAGTGATGATAATGAAGATAGAATTGATAACGAAAATGAACGATTTAGAACAGTTCTTGAAAAAATATCACCGCGACCAAAGAAAAATCCAAATCTAACTGGCCCTTCGTCTTCTCGCAGTGCACCAATAGCCCAGAAAGCAGTGGAAATAACAAGCAGCCCTAACAAATCTAGACTTACAaacttaaaaagaaaaatcagtTCACCAAAGCCTAACAATAAGaagaaacataaaaaagaaattgaaaatgattcaTGGTTTTGTATATTATGCGAAGAAACCAAGGAAGACGAAATGATCCAATGTATGAAATGTCGCGCTTGGATACATACTAGGTGTGGTGGAGTTAGTGCTGCAACTAAAAGGTTTTTCTGCCATAATTGCCGTTAA
- Protein Sequence
- MSKRGRYGSWSENDLLLAVAAYKNGNYGLNECSRVYGVPKATIKRHADKKNLICNNVKSMGRRPVFSADMEKIISEHILHLEECFFGLTIKEVRKLAFDVAEKYDLPNSFNKDKKIAGKKWFYAFLKRNPQLSLRKPEGTSMARARGFNRENVNHFFDLLEQIVDKHKFTADTIFNVDESGFTTVQKSLPKIIARKGKHQVGSITSGERGVNTTMVCAVSAAGLYIPPMIIFKRKKLHPDLKIGAPPASLVTVSDTGYINSDLFVEWLKHFQKHINCNVNNKVLLLLDGHTTHSKNLQACEFARQNGIVLLQLPGHTTHRLQPLDIAFFGPLQTYFTQAQETFLRLYKGDKIYQTQMSKLLNEAYGKAATVGIAESAFRASGIWPVNRHVFTDDQFAPADVLQPSETPVSTSSSDDNEDRIDNENERFRTVLEKISPRPKKNPNLTGPSSSRSAPIAQKAVEITSSPNKSRLTNLKRKISSPKPNNKKKHKKEIENDSWFCILCEETKEDEMIQCMKCRAWIHTRCGGVSAATKRFFCHNCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -